+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                           Aminoglycoside                                                                                           |
+-------------------+------------+--------------------------------+------------+-------------------------+----------------------+----------------------+---------------------------+-----------------+
| Resistance gene   |   Identity | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig               | Position in contig   | Phenotype                 | Accession no.   |
|-------------------+------------+--------------------------------+------------+-------------------------+----------------------+----------------------+---------------------------+-----------------|
| aac(6')-Iaa       |    99.3151 | 438/438                        |        100 | 1..438                  | contig1|denovo|sdS58 | 164264..164701       | Aminoglycoside resistance | NC_003197       |
+-------------------+------------+--------------------------------+------------+-------------------------+----------------------+----------------------+---------------------------+-----------------+

+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                        Fluoroquinolone                                                                                         |
+-------------------+------------+--------------------------------+------------+-------------------------+-----------------------+----------------------+----------------------+-----------------+
| Resistance gene   |   Identity | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig                | Position in contig   | Phenotype            | Accession no.   |
|-------------------+------------+--------------------------------+------------+-------------------------+-----------------------+----------------------+----------------------+-----------------|
| qnrS1             |        100 | 657/657                        |        100 | 1..657                  | contig26|denovo|sdS58 | 2168..2824           | Quinolone resistance | AB187515        |
+-------------------+------------+--------------------------------+------------+-------------------------+-----------------------+----------------------+----------------------+-----------------+

##################### aminoglycoside #####################
aac(6')-Iaa, ID: 99.32 %, Alignment Length/Gene Length: 438/438, Coverage: 100.0, Positions in reference: 1..438, Contig name: contig1|denovo|sdS58, Position: 164264..164701

ATGGACATCAGGCAAATGAACAGAACCCATCTGGATCACTGGCGCGGATTGCGAAAACAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGGACATCAGGCAAATGAACAGAACCCATCTGGATCACTGGCGCGGATTGCGAAAACAG

CTCTGGCCTGGTCACCCGGATGACGCCCATCTGGCGGACGGCGAAGAAATTCTGCAAGCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTCTGGCCTGGTCACCCGGATGACGCCCATCTGGCGGACGGCGAAGAAATTCTGCAAGCC

GATCATCTGGCATCATTTATTGCGATGGCAGACGGGGTGGCGATTGGCTTTGCGGATGCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GATCATCTGGCATCATTTATTGCGATGGCAGACGGGGTGGCGATTGGCTTTGCGGATGCC

TCAATCCGCCACGATTATGTCAATGGCTGTGACAGTTCGCCCGTGGTTTTCCTTGAAGGT
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
TCAATCCGCCACGATTATGTCAATGGCTGTGACAGTTCGCCCGTGGCTTTCCTTGAAGGT

ATTTTTGTTCTCCCCTCATTCCGTCAACGCGGCGTAGCGAAACAATTGATTGCAGCGGTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATTTTTGTTCTCCCCTCATTCCGTCAACGCGGCGTAGCGAAACAATTGATTGCAGCGGTG

CAACGATGGGGAACGAATAAAGGGTGTCGGGAAATGGCCTCCGATACCTCGCCGGAAAAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAACGATGGGGAACGAATAAAGGGTGTCGGGAAATGGCCTCCGATACCTCGCCGGAAAAT

ACAATTTCCCAGAAAGTTCATCAGGCGTTAGGATTTGAGGAAACAGAGCGCGTCATTTTC
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
ACAATTTCCCAGAAAGTTCACCAGGCGTTAGGATTTGAGGAAACAGAGCGCGTCATTTTC

TACCGAAAGCGTTGTTGA
||||| ||||||||||||
TACCGGAAGCGTTGTTGA


##################### quinolone #####################
qnrS1, ID: 100.00 %, Alignment Length/Gene Length: 657/657, Coverage: 100.0, Positions in reference: 1..657, Contig name: contig26|denovo|sdS58, Position: 2168..2824

ATGGAAACCTACAATCATACATATCGGCACCACAACTTTTCACATAAAGACTTAAGTGAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGGAAACCTACAATCATACATATCGGCACCACAACTTTTCACATAAAGACTTAAGTGAT

CTCACCTTCACCGCTTGCACATTCATTCGCAGCGACTTTCGACGTGCTAACTTGCGTGAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTCACCTTCACCGCTTGCACATTCATTCGCAGCGACTTTCGACGTGCTAACTTGCGTGAT

ACGACATTCGTCAACTGCAAGTTCATTGAACAGGGTGATATCGAAGGCTGCCACTTTGAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ACGACATTCGTCAACTGCAAGTTCATTGAACAGGGTGATATCGAAGGCTGCCACTTTGAT

GTCGCAGATCTTCGTGATGCAAGTTTCCAACAATGCCAACTTGCGATGGCAAACTTCAGT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTCGCAGATCTTCGTGATGCAAGTTTCCAACAATGCCAACTTGCGATGGCAAACTTCAGT

AATGCCAATTGCTACGGTATAGAGTTCCGTGCGTGTGATTTAAAAGGTGCCAACTTTTCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AATGCCAATTGCTACGGTATAGAGTTCCGTGCGTGTGATTTAAAAGGTGCCAACTTTTCC

CGAACAAACTTTGCCCATCAAGTGAGTAATCGTATGTACTTTTGCTCAGCATTTATTTCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CGAACAAACTTTGCCCATCAAGTGAGTAATCGTATGTACTTTTGCTCAGCATTTATTTCT

GGATGTAATCTTTCCTATGCCAATATGGAGAGGGTTTGTTTAGAAAAATGTGAGTTGTTT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGATGTAATCTTTCCTATGCCAATATGGAGAGGGTTTGTTTAGAAAAATGTGAGTTGTTT

GAAAATCGCTGGATAGGAACGAACCTAGCGGGTGCATCACTGAAAGAGTCAGACTTAAGT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GAAAATCGCTGGATAGGAACGAACCTAGCGGGTGCATCACTGAAAGAGTCAGACTTAAGT

CGAGGTGTTTTTTCCGAAGATGTCTGGGGGCAATTTAGCCTACAGGGTGCCAATTTATGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CGAGGTGTTTTTTCCGAAGATGTCTGGGGGCAATTTAGCCTACAGGGTGCCAATTTATGC

CACGCCGAACTCGACGGTTTAGATCCCCGCAAAGTCGATACATCAGGTATCAAAATTGCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CACGCCGAACTCGACGGTTTAGATCCCCGCAAAGTCGATACATCAGGTATCAAAATTGCA

GCCTGGCAGCAAGAACTGATTCTCGAAGCACTGGGTATTGTTGTTTATCCTGACTAA
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCTGGCAGCAAGAACTGATTCTCGAAGCACTGGGTATTGTTGTTTATCCTGACTAA


