+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                                                          Aminoglycoside                                                                                                                           |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+
| Resistance gene   | Identity          | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig                                           | Position in contig   | Phenotype                                             | Accession no.   |
|-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------|
| aac(6')-Iaa       | 99.31506849315068 | 438/438                        |   100      | 1..438                  | contig3|denovo|jx16s40                           | 164272..164709       | Aminoglycoside resistance                             | NC_003197       |
| aph(6)-Id         | 100.0             | 837/837                        |   100      | 1..837                  | contig39|denovo|jx16s40                          | 660..1496            | Aminoglycoside resistance Alternate name; aph(6)-Id   | M28829          |
| aph(3'')-Ib       | 100.0, 100.00     | 804/804                        |    82.0896 | 145..804, 1..221        | contig39|denovo|jx16s40, contig39|denovo|jx16s40 | 1..660, 9071..9291   | Aminoglycoside resistance Alternate name; aph(3'')-Ib | AF321551        |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+

+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                                                             Phenicol                                                                                                                              |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+
| Resistance gene   | Identity          | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig                                           | Position in contig   | Phenotype                                             | Accession no.   |
|-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------|
| floR              | 98.18780889621087 | 1214/1215                      |    99.9177 | 1..1214                 | contig43|denovo|jx16s40                          | 1850..3063           | Phenicol resistance                                   | AF118107        |
| aph(3'')-Ib       | 100.0, 100.00     | 804/804                        |    82.0896 | 145..804, 1..221        | contig39|denovo|jx16s40, contig39|denovo|jx16s40 | 1..660, 9071..9291   | Aminoglycoside resistance Alternate name; aph(3'')-Ib | AF321551        |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+

+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                                                         Sulphonamide                                                                                                                          |
+-------------------+---------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+
| Resistance gene   | Identity      | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig                                           | Position in contig   | Phenotype                                             | Accession no.   |
|-------------------+---------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------|
| sul2              | 100.0         | 816/816                        |   100      | 1..816                  | contig39|denovo|jx16s40                          | 8195..9010           | Sulphonamide resistance                               | AY034138        |
| aph(3'')-Ib       | 100.0, 100.00 | 804/804                        |    82.0896 | 145..804, 1..221        | contig39|denovo|jx16s40, contig39|denovo|jx16s40 | 1..660, 9071..9291   | Aminoglycoside resistance Alternate name; aph(3'')-Ib | AF321551        |
+-------------------+---------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+

+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
|                                                                                                                           Tetracycline                                                                                                                            |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+
| Resistance gene   | Identity          | Alignment Length/Gene Length   |   Coverage | Position in reference   | Contig                                           | Position in contig   | Phenotype                                             | Accession no.   |
|-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------|
| tet(A)            | 99.83333333333333 | 1200/1200                      |   100      | 1..1200                 | contig39|denovo|jx16s40                          | 2923..4122           | Tetracycline resistance                               | AJ517790        |
| aph(3'')-Ib       | 100.0, 100.00     | 804/804                        |    82.0896 | 145..804, 1..221        | contig39|denovo|jx16s40, contig39|denovo|jx16s40 | 1..660, 9071..9291   | Aminoglycoside resistance Alternate name; aph(3'')-Ib | AF321551        |
+-------------------+-------------------+--------------------------------+------------+-------------------------+--------------------------------------------------+----------------------+-------------------------------------------------------+-----------------+

##################### aminoglycoside #####################
aac(6')-Iaa, ID: 99.32 %, Alignment Length/Gene Length: 438/438, Coverage: 100.0, Positions in reference: 1..438, Contig name: contig3|denovo|jx16s40, Position: 164272..164709

ATGGACATCAGGCAAATGAACAGAACCCATCTGGATCACTGGCGCGGATTGCGAAAACAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGGACATCAGGCAAATGAACAGAACCCATCTGGATCACTGGCGCGGATTGCGAAAACAG

CTCTGGCCTGGTCACCCGGATGACGCCCATCTGGCGGACGGCGAAGAAATTCTGCAAGCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTCTGGCCTGGTCACCCGGATGACGCCCATCTGGCGGACGGCGAAGAAATTCTGCAAGCC

GATCATCTGGCATCATTTATTGCGATGGCAGACGGGGTGGCGATTGGCTTTGCGGATGCC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GATCATCTGGCATCATTTATTGCGATGGCAGACGGGGTGGCGATTGGCTTTGCGGATGCC

TCAATCCGCCACGATTATGTCAATGGCTGTGACAGTTCGCCCGTGGTTTTCCTTGAAGGT
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
TCAATCCGCCACGATTATGTCAATGGCTGTGACAGTTCGCCCGTGGCTTTCCTTGAAGGT

ATTTTTGTTCTCCCCTCATTCCGTCAACGCGGCGTAGCGAAACAATTGATTGCAGCGGTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATTTTTGTTCTCCCCTCATTCCGTCAACGCGGCGTAGCGAAACAATTGATTGCAGCGGTG

CAACGATGGGGAACGAATAAAGGGTGTCGGGAAATGGCCTCCGATACCTCGCCGGAAAAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAACGATGGGGAACGAATAAAGGGTGTCGGGAAATGGCCTCCGATACCTCGCCGGAAAAT

ACAATTTCCCAGAAAGTTCATCAGGCGTTAGGATTTGAGGAAACAGAGCGCGTCATTTTC
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
ACAATTTCCCAGAAAGTTCACCAGGCGTTAGGATTTGAGGAAACAGAGCGCGTCATTTTC

TACCGAAAGCGTTGTTGA
||||| ||||||||||||
TACCGGAAGCGTTGTTGA


aph(6)-Id, ID: 100.00 %, Alignment Length/Gene Length: 837/837, Coverage: 100.0, Positions in reference: 1..837, Contig name: contig39|denovo|jx16s40, Position: 660..1496

ATGTTCATGCCGCCTGTTTTTCCTGCTCATTGGCACGTTTCGCAACCTGTTCTCATTGCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGTTCATGCCGCCTGTTTTTCCTGCTCATTGGCACGTTTCGCAACCTGTTCTCATTGCG

GACACCTTTTCCAGCCTCGTTTGGAAAGTTTCATTGCCAGACGGGACTCCTGCAATCGTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GACACCTTTTCCAGCCTCGTTTGGAAAGTTTCATTGCCAGACGGGACTCCTGCAATCGTC

AAGGGATTGAAACCTATAGAAGACATTGCTGATGAACTGCGCGGGGCCGACTATCTGGTA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AAGGGATTGAAACCTATAGAAGACATTGCTGATGAACTGCGCGGGGCCGACTATCTGGTA

TGGCGCAATGGGAGGGGAGCAGTCCGGTTGCTCGGTCGTGAGAACAATCTGATGTTGCTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TGGCGCAATGGGAGGGGAGCAGTCCGGTTGCTCGGTCGTGAGAACAATCTGATGTTGCTC

GAATATGCCGGGGAGCGAATGCTCTCTCACATCGTTGCCGAGCACGGCGACTACCAGGCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GAATATGCCGGGGAGCGAATGCTCTCTCACATCGTTGCCGAGCACGGCGACTACCAGGCG

ACCGAAATTGCAGCGGAACTAATGGCGAAGCTGTATGCCGCATCTGAGGAACCCCTGCCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ACCGAAATTGCAGCGGAACTAATGGCGAAGCTGTATGCCGCATCTGAGGAACCCCTGCCT

TCTGCCCTTCTCCCGATCCGGGATCGCTTTGCAGCTTTGTTTCAGCGGGCGCGCGATGAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TCTGCCCTTCTCCCGATCCGGGATCGCTTTGCAGCTTTGTTTCAGCGGGCGCGCGATGAT

CAAAACGCAGGTTGTCAAACTGACTACGTCCACGCGGCGATTATAGCCGATCAAATGATG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAAAACGCAGGTTGTCAAACTGACTACGTCCACGCGGCGATTATAGCCGATCAAATGATG

AGCAATGCCTCGGAACTGCGTGGGCTACATGGCGATCTGCATCATGAAAACATCATGTTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AGCAATGCCTCGGAACTGCGTGGGCTACATGGCGATCTGCATCATGAAAACATCATGTTC

TCCAGTCGCGGCTGGCTGGTGATAGATCCCGTCGGTCTGGTCGGTGAAGTGGGCTTTGGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TCCAGTCGCGGCTGGCTGGTGATAGATCCCGTCGGTCTGGTCGGTGAAGTGGGCTTTGGC

GCCGCCAATATGTTCTACGATCCGGCTGACAGAGACGACCTTTGTCTCGATCCTAGACGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCGCCAATATGTTCTACGATCCGGCTGACAGAGACGACCTTTGTCTCGATCCTAGACGC

ATTGCACAGATGGCGGACGCATTCTCTCGTGCGCTGGACGTCGATCCGCGTCGCCTGCTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATTGCACAGATGGCGGACGCATTCTCTCGTGCGCTGGACGTCGATCCGCGTCGCCTGCTC

GACCAGGCGTACGCTTATGGGTGCCTTTCCGCAGCTTGGAACGCGGATGGAGAAGAGGAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GACCAGGCGTACGCTTATGGGTGCCTTTCCGCAGCTTGGAACGCGGATGGAGAAGAGGAG

CAACGCGATCTAGCTATCGCGGCCGCGATCAAGCAGGTGCGACAGACGTCATACTAG
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAACGCGATCTAGCTATCGCGGCCGCGATCAAGCAGGTGCGACAGACGTCATACTAG


aph(3'')-Ib, ID: 100.00 %, Alignment Length/Gene Length: 660/804, Coverage: 82.08955223880598, Positions in reference: 145..804, Contig name: contig39|denovo|jx16s40, Position: 1..660

TTGAATCGAACTAATATTTTTTTTGGTGAATCGCATTCTGACTGGTTGCCTGTCAGAGGC
                                                            
------------------------------------------------------------

GGAGAATCTGGTGATTTTGTTTTTCGACGTGGTGACGGGCATGCCTTCGCGAAAATCGCA
                                                            
------------------------------------------------------------

CCTGCTTCCCGCCGCGGTGAGCTCGCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGT
                        ||||||||||||||||||||||||||||||||||||
------------------------GCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGT

CGAGGTGTGGCTTGCCCCGAGGTCATCAACTGGCAGGAGGAACAGGAGGGTGCATGCTTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CGAGGTGTGGCTTGCCCCGAGGTCATCAACTGGCAGGAGGAACAGGAGGGTGCATGCTTG

GTGATAACGGCAATTCCGGGAGTACCGGCGGCTGATCTGTCTGGAGCGGATTTGCTCAAA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTGATAACGGCAATTCCGGGAGTACCGGCGGCTGATCTGTCTGGAGCGGATTTGCTCAAA

GCGTGGCCGTCAATGGGGCAGCAACTTGGCGCTGTTCACAGCCTATCGGTTGATCAATGT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCGTGGCCGTCAATGGGGCAGCAACTTGGCGCTGTTCACAGCCTATCGGTTGATCAATGT

CCGTTTGAGCGCAGGCTGTCGCGAATGTTCGGACGCGCCGTTGATGTGGTGTCCCGCAAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCGTTTGAGCGCAGGCTGTCGCGAATGTTCGGACGCGCCGTTGATGTGGTGTCCCGCAAT

GCCGTCAATCCCGACTTCTTACCGGACGAGGACAAGAGTACGCCGCAGCTCGATCTTTTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCGTCAATCCCGACTTCTTACCGGACGAGGACAAGAGTACGCCGCAGCTCGATCTTTTG

GCTCGTGTCGAACGAGAGCTACCGGTGCGGCTCGACCAAGAGCGCACCGATATGGTTGTT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCTCGTGTCGAACGAGAGCTACCGGTGCGGCTCGACCAAGAGCGCACCGATATGGTTGTT

TGCCATGGTGATCCCTGCATGCCGAACTTCATGGTGGACCCTAAAACTCTTCAATGCACG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TGCCATGGTGATCCCTGCATGCCGAACTTCATGGTGGACCCTAAAACTCTTCAATGCACG

GGTCTGATCGACCTTGGGCGGCTCGGAACAGCAGATCGCTATGCCGATTTGGCACTCATG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGTCTGATCGACCTTGGGCGGCTCGGAACAGCAGATCGCTATGCCGATTTGGCACTCATG

ATTGCTAACGCCGAAGAGAACTGGGCAGCGCCAGATGAAGCAGAGCGCGCCTTCGCTGTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATTGCTAACGCCGAAGAGAACTGGGCAGCGCCAGATGAAGCAGAGCGCGCCTTCGCTGTC

CTATTCAATGTATTGGGGATCGAAGCCCCCGACCGCGAACGCCTTGCCTTCTATCTGCGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTATTCAATGTATTGGGGATCGAAGCCCCCGACCGCGAACGCCTTGCCTTCTATCTGCGA

TTGGACCCTCTGACTTGGGGTTGA
||||||||||||||||||||||||
TTGGACCCTCTGACTTGGGGTTGA


aph(3'')-Ib, ID: 100.00 %, Alignment Length/Gene Length: 221/804, Coverage: 27.487562189054728, Positions in reference: 1..221, Contig name: contig39|denovo|jx16s40, Position: 9071..9291

TTGAATCGAACTAATATTTTTTTTGGTGAATCGCATTCTGACTGGTTGCCTGTCAGAGGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TTGAATCGAACTAATATTTTTTTTGGTGAATCGCATTCTGACTGGTTGCCTGTCAGAGGC

GGAGAATCTGGTGATTTTGTTTTTCGACGTGGTGACGGGCATGCCTTCGCGAAAATCGCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGAGAATCTGGTGATTTTGTTTTTCGACGTGGTGACGGGCATGCCTTCGCGAAAATCGCA

CCTGCTTCCCGCCGCGGTGAGCTCGCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCTGCTTCCCGCCGCGGTGAGCTCGCTGGAGAGCGTGACCGCCTCATTTGGCTCAAAGGT

CGAGGTGTGGCTTGCCCCGAGGTCATCAACTGGCAGGAGGAACAGGAGGGTGCATGCTTG
|||||||||||||||||||||||||||||||||||||||||                   
CGAGGTGTGGCTTGCCCCGAGGTCATCAACTGGCAGGAGGA-------------------

GTGATAACGGCAATTCCGGGAGTACCGGCGGCTGATCTGTCTGGAGCGGATTTGCTCAAA
                                                            
------------------------------------------------------------

GCGTGGCCGTCAATGGGGCAGCAACTTGGCGCTGTTCACAGCCTATCGGTTGATCAATGT
                                                            
------------------------------------------------------------

CCGTTTGAGCGCAGGCTGTCGCGAATGTTCGGACGCGCCGTTGATGTGGTGTCCCGCAAT
                                                            
------------------------------------------------------------

GCCGTCAATCCCGACTTCTTACCGGACGAGGACAAGAGTACGCCGCAGCTCGATCTTTTG
                                                            
------------------------------------------------------------

GCTCGTGTCGAACGAGAGCTACCGGTGCGGCTCGACCAAGAGCGCACCGATATGGTTGTT
                                                            
------------------------------------------------------------

TGCCATGGTGATCCCTGCATGCCGAACTTCATGGTGGACCCTAAAACTCTTCAATGCACG
                                                            
------------------------------------------------------------

GGTCTGATCGACCTTGGGCGGCTCGGAACAGCAGATCGCTATGCCGATTTGGCACTCATG
                                                            
------------------------------------------------------------

ATTGCTAACGCCGAAGAGAACTGGGCAGCGCCAGATGAAGCAGAGCGCGCCTTCGCTGTC
                                                            
------------------------------------------------------------

CTATTCAATGTATTGGGGATCGAAGCCCCCGACCGCGAACGCCTTGCCTTCTATCTGCGA
                                                            
------------------------------------------------------------

TTGGACCCTCTGACTTGGGGTTGA
                        
------------------------


##################### phenicol #####################
floR, ID: 98.19 %, Alignment Length/Gene Length: 1214/1215, Coverage: 99.91769547325103, Positions in reference: 1..1214, Contig name: contig43|denovo|jx16s40, Position: 1850..3063

ATGACCACCACACGCCCCGCGTGGGCCTATACGCTGCCGGCAGCACTGCTGCTGATGGCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGACCACCACACGCCCCGCGTGGGCCTATACGCTGCCGGCAGCACTGCTGCTGATGGCT

CCTTTCGACATCCTCGCTTCACTGGCGATGGATATTTATCTCCCTGTCGTTCCAGCGATG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCTTTCGACATCCTCGCTTCACTGGCGATGGATATTTATCTCCCTGTCGTTCCAGCGATG

CCCGGCATCCTGAACACGACGCCCGCTATGATCCAACTCACGTTGAGCCTCTATATGGTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCCGGCATCCTGAACACGACGCCCGCTATGATCCAACTCACGTTGAGCCTCTATATGGTG

ATGCTCGGCGTGGGCCAGGTGATTTTTGGTCCGCTCTCAGACAGAATCGGGCGACGGCCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGCTCGGCGTGGGCCAGGTGATTTTTGGTCCGCTCTCAGACAGAATCGGGCGACGGCCA

ATTCTACTTGCGGGCGCAACGGCTTTCGTCATTGCGTCTCTGGGAGCAGCTTGGTCTTCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATTCTACTTGCGGGCGCAACGGCTTTCGTCATTGCGTCTCTGGGAGCAGCTTGGTCTTCA

ACTGCACCGGCCTTTGTCGCTTTCCGTCTACTTCAAGCAGTGGGCGCGTCGGCCATGCTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ACTGCACCGGCCTTTGTCGCTTTCCGTCTACTTCAAGCAGTGGGCGCGTCGGCCATGCTG

GTGGCGACGTTCGCGACGGTTCGCGACGTTTATGCCAACCGTCCTGAGGGTGTCGTCATC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTGGCGACGTTCGCGACGGTTCGCGACGTTTATGCCAACCGTCCTGAGGGTGTCGTCATC

TACGGCCTTTTCAGTTCGATGCTGGCGTTCGTGCCTGCGCTCGGCCCTATCGCCGGAGCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TACGGCCTTTTCAGTTCGATGCTGGCGTTCGTGCCTGCGCTCGGCCCTATCGCCGGAGCA

TTGATCGGCGAGTTCTTGGGATGGCAGGCGATATTCATTACTTTGGCTATACTGGCGATG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TTGATCGGCGAGTTCTTGGGATGGCAGGCGATATTCATTACTTTGGCTATACTGGCGATG

CTCGCACTCCTAAATGCGGGTTTCAGGTGGCACGAAACCCGCCCTCTGGATCAAGTCAAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTCGCACTCCTAAATGCGGGTTTCAGGTGGCACGAAACCCGCCCTCTGGATCAAGTCAAG

ACGCGCCGATCTGTCTTGCCGATCTTCGCGAGTCCGGCTTTTTGGGTTTACACTGTCGGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ACGCGCCGATCTGTCTTGCCGATCTTCGCGAGTCCGGCTTTTTGGGTTTACACTGTCGGC

TTTAGCGCCGGTATGGGCACCTTCTTCGTCTTCTTCTCGACGGCTCCCCGTGTGCTCATA
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
TTTAGCGCCGGTATGGGCACCTACTTCGTCTTCTTCTCGACGGCTCCCCGTGTGCTCATA

GGCCAAGCGGAATATTCCGAGATCGGATTCAGCTTTGCCTTCGCCACTGTCGCGCTTGTA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGCCAAGCGGAATATTCCGAGATCGGATTCAGCTTTGCCTTCGCCACTGTCGCGCTTGTA

ATGATCGTGACAACCCGTTTCGCGAAGTCCTTTGTCGCCAGATGGGGCATCGCAGGATGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGATCGTGACAACCCGTTTCGCGAAGTCCTTTGTCGCCAGATGGGGCATCGCAGGATGC

GTGGCGCGTGGGATGGCGTTGCTTGTTTGCGGAGCGGTCCTGTTGGGGATCGGCGAACTT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTGGCGCGTGGGATGGCGTTGCTTGTTTGCGGAGCGGTCCTGTTGGGGATCGGCGAACTT

TACGGCTCGCCGTCATTCCTCACCTTCATCCTACCGATGTGGGTTGTCGCGGTCGGTATT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TACGGCTCGCCGTCATTCCTCACCTTCATCCTACCGATGTGGGTTGTCGCGGTCGGTATT

GTCTTCACGGTGTCCGTTACCGCGAACGGCGCTTTGGCAGAGTTCGACGACATCGCGGGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTCTTCACGGTGTCCGTTACCGCGAACGGCGCTTTGGCAGAGTTCGACGACATCGCGGGA

TCAGCGGTCGCGTTCTACTTCTGCATCCAAAGCCTGATAGTCAGTATCGTCGGGACATTG
|||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||
TCAGCGGTCGCGTTCTACTTCTGCGTTCAAAGCCTGATAGTCAGCATTGTCGGGACATTG

GCGGTGACGCTGTTAAACGGCGATACAGCGTGGCCCGTGATTTGTTACGCCACGGCAATG
|||||| | || |||||||  || ||||||||||||||||| |||||||||||||| |||
GCGGTGGCACTTTTAAACGATGACACAGCGTGGCCCGTGATCTGTTACGCCACGGCGATG

GCAGTGCTGGTGTCGTTGGGGCTGGCGCTCCTTCGATCCCGTGATGCTGCCACCGAGAAG
|| || ||||| ||||||||||||| |||||||||   |||||  |||||||||||||||
GCGGTACTGGTTTCGTTGGGGCTGGTGCTCCTTCGGCTCCGTGGGGCTGCCACCGAGAAG

TCGCCAGTCGTCTAG
|||||||||||||| 
TCGCCAGTCGTCTAa


##################### sulphonamide #####################
sul2, ID: 100.00 %, Alignment Length/Gene Length: 816/816, Coverage: 100.0, Positions in reference: 1..816, Contig name: contig39|denovo|jx16s40, Position: 8195..9010

ATGAATAAATCGCTCATCATTTTCGGCATCGTCAACATAACCTCGGACAGTTTCTCCGAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGAATAAATCGCTCATCATTTTCGGCATCGTCAACATAACCTCGGACAGTTTCTCCGAT

GGAGGCCGGTATCTGGCGCCAGACGCAGCCATTGCGCAGGCGCGTAAGCTGATGGCCGAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGAGGCCGGTATCTGGCGCCAGACGCAGCCATTGCGCAGGCGCGTAAGCTGATGGCCGAG

GGGGCAGATGTGATCGACCTCGGTCCGGCATCCAGCAATCCCGACGCCGCGCCTGTTTCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGGGCAGATGTGATCGACCTCGGTCCGGCATCCAGCAATCCCGACGCCGCGCCTGTTTCG

TCCGACACAGAAATCGCGCGTATCGCGCCGGTGCTGGACGCGCTCAAGGCAGATGGCATT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TCCGACACAGAAATCGCGCGTATCGCGCCGGTGCTGGACGCGCTCAAGGCAGATGGCATT

CCCGTCTCGCTCGACAGTTATCAACCCGCGACGCAAGCCTATGCCTTGTCGCGTGGTGTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCCGTCTCGCTCGACAGTTATCAACCCGCGACGCAAGCCTATGCCTTGTCGCGTGGTGTG

GCCTATCTCAATGATATTCGCGGTTTTCCAGACGCTGCGTTCTATCCGCAATTGGCGAAA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCTATCTCAATGATATTCGCGGTTTTCCAGACGCTGCGTTCTATCCGCAATTGGCGAAA

TCATCTGCCAAACTCGTCGTTATGCATTCGGTGCAAGACGGGCAGGCAGATCGGCGCGAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TCATCTGCCAAACTCGTCGTTATGCATTCGGTGCAAGACGGGCAGGCAGATCGGCGCGAG

GCACCCGCTGGCGACATCATGGATCACATTGCGGCGTTCTTTGACGCGCGCATCGCGGCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCACCCGCTGGCGACATCATGGATCACATTGCGGCGTTCTTTGACGCGCGCATCGCGGCG

CTGACGGGTGCCGGTATCAAACGCAACCGCCTTGTCCTTGATCCCGGCATGGGGTTTTTT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTGACGGGTGCCGGTATCAAACGCAACCGCCTTGTCCTTGATCCCGGCATGGGGTTTTTT

CTGGGGGCTGCTCCCGAAACCTCGCTCTCGGTGCTGGCGCGGTTCGATGAATTGCGGCTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTGGGGGCTGCTCCCGAAACCTCGCTCTCGGTGCTGGCGCGGTTCGATGAATTGCGGCTG

CGCTTCGATTTGCCGGTGCTTCTGTCTGTTTCGCGCAAATCCTTTCTGCGCGCGCTCACA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CGCTTCGATTTGCCGGTGCTTCTGTCTGTTTCGCGCAAATCCTTTCTGCGCGCGCTCACA

GGCCGTGGTCCGGGGGATGTCGGGGCCGCGACACTCGCTGCAGAGCTTGCCGCCGCCGCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGCCGTGGTCCGGGGGATGTCGGGGCCGCGACACTCGCTGCAGAGCTTGCCGCCGCCGCA

GGTGGAGCTGACTTCATCCGCACACACGAGCCGCGCCCCTTGCGCGACGGGCTGGCGGTA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGTGGAGCTGACTTCATCCGCACACACGAGCCGCGCCCCTTGCGCGACGGGCTGGCGGTA

TTGGCGGCGCTGAAAGAAACCGCAAGAATTCGTTAA
||||||||||||||||||||||||||||||||||||
TTGGCGGCGCTGAAAGAAACCGCAAGAATTCGTTAA


##################### tetracycline #####################
tet(A), ID: 99.83 %, Alignment Length/Gene Length: 1200/1200, Coverage: 100.0, Positions in reference: 1..1200, Contig name: contig39|denovo|jx16s40, Position: 2923..4122

GTGAAACCCAACAGACCCCTGATCGTAATTCTGAGCACTGTCGCGCTCGACGCTGTCGGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTGAAACCCAACAGACCCCTGATCGTAATTCTGAGCACTGTCGCGCTCGACGCTGTCGGC

ATCGGCCTGATTATGCCGGTGCTGCCGGGCCTCCTGCGCGATCTGGTTCACTCGAACGAC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATCGGCCTGATTATGCCGGTGCTGCCGGGCCTCCTGCGCGATCTGGTTCACTCGAACGAC

GTCACCGCCCACTATGGCATTCTGCTGGCGCTGTATGCGTTGATGCAATTTGCCTGCGCA
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GTCGCCGCCCACTATGGCATTCTGCTGGCGCTGTATGCGTTGATGCAATTTGCCTGCGCA

CCTGTGCTGGGCGCGCTGTCGGATCGTTTCGGGCGGCGGCCGGTCTTGCTCGTCTCGCTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CCTGTGCTGGGCGCGCTGTCGGATCGTTTCGGGCGGCGGCCGGTCTTGCTCGTCTCGCTG

GCCGGCGCTGCTGTCGACTACGCCATCATGGCGACGGCGCCTTTCCTTTGGGTTCTCTAT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCGGCGCTGCTGTCGACTACGCCATCATGGCGACGGCGCCTTTCCTTTGGGTTCTCTAT

ATCGGGCGGATCGTGGCCGGCATCACCGGGGCGACTGGGGCGGTAGCCGGCGCTTATATT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATCGGGCGGATCGTGGCCGGCATCACCGGGGCGACTGGGGCGGTAGCCGGCGCTTATATT

GCCGATATCACTGATGGCGATGAGCGCGCGCGGCACTTCGGCTTCATGAGCGCCTGTTTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCCGATATCACTGATGGCGATGAGCGCGCGCGGCACTTCGGCTTCATGAGCGCCTGTTTC

GGGTTCGGGATGGTCGCGGGACCTGTGCTCGGTGGGCTGATGGGCGGTTTCTCCCCCCAC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGGTTCGGGATGGTCGCGGGACCTGTGCTCGGTGGGCTGATGGGCGGTTTCTCCCCCCAC

GCTCCGTTCTTCGCCGCGGCAGCCTTGAACGGCCTCAATTTCCTGACGGGCTGTTTCCTT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCTCCGTTCTTCGCCGCGGCAGCCTTGAACGGCCTCAATTTCCTGACGGGCTGTTTCCTT

TTGCCGGAGTCGCACAAAGGCGAACGCCGGCCGTTACGCCGGGAGGCTCTCAACCCGCTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TTGCCGGAGTCGCACAAAGGCGAACGCCGGCCGTTACGCCGGGAGGCTCTCAACCCGCTC

GCTTCGTTCCGGTGGGCCCGGGGCATGACCGTCGTCGCCGCCCTGATGGCGGTCTTCTTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCTTCGTTCCGGTGGGCCCGGGGCATGACCGTCGTCGCCGCCCTGATGGCGGTCTTCTTC

ATCATGCAACTTGTCGGACAGGTGCCGGCCGCGCTTTGGGTCATTTTCGGCGAGGATCGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATCATGCAACTTGTCGGACAGGTGCCGGCCGCGCTTTGGGTCATTTTCGGCGAGGATCGC

TTTCACTGGGACGCGACCACGATCGGCATTTCGCTTGCCGCATTTGGCATTCTGCATTCA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TTTCACTGGGACGCGACCACGATCGGCATTTCGCTTGCCGCATTTGGCATTCTGCATTCA

CTCGCCCAGGCAATGATCACCGGCCCTGTAGCCGCCCGGCTCGGCGAAAGGCGGGCACTC
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
CTCGCCCAGGCAATGATCACTGGCCCTGTAGCCGCCCGGCTCGGCGAAAGGCGGGCACTC

ATGCTCGGAATGATTGCCGACGGCACAGGCTACATCCTGCTTGCCTTCGCGACACGGGGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATGCTCGGAATGATTGCCGACGGCACAGGCTACATCCTGCTTGCCTTCGCGACACGGGGA

TGGATGGCGTTCCCGATCATGGTCCTGCTTGCTTCGGGTGGCATCGGAATGCCGGCGCTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TGGATGGCGTTCCCGATCATGGTCCTGCTTGCTTCGGGTGGCATCGGAATGCCGGCGCTG

CAAGCAATGTTGTCCAGGCAGGTGGATGAGGAACGTCAGGGGCAGCTGCAAGGCTCACTG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAAGCAATGTTGTCCAGGCAGGTGGATGAGGAACGTCAGGGGCAGCTGCAAGGCTCACTG

GCGGCGCTCACCAGCCTGACCTCGATCGTCGGACCCCTCCTCTTCACGGCGATCTATGCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCGGCGCTCACCAGCCTGACCTCGATCGTCGGACCCCTCCTCTTCACGGCGATCTATGCG

GCTTCTATAACAACGTGGAACGGGTGGGCATGGATTGCAGGCGCTGCCCTCTACTTGCTC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GCTTCTATAACAACGTGGAACGGGTGGGCATGGATTGCAGGCGCTGCCCTCTACTTGCTC

TGCCTGCCGGCGCTGCGTCGCGGGCTTTGGAGCGGCGCAGGGCAACGAGCCGATCGCTGA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TGCCTGCCGGCGCTGCGTCGCGGGCTTTGGAGCGGCGCAGGGCAACGAGCCGATCGCTGA


