LICENSE
README.md
setup.py
FunID.egg-info/PKG-INFO
FunID.egg-info/SOURCES.txt
FunID.egg-info/dependency_links.txt
FunID.egg-info/entry_points.txt
FunID.egg-info/not-zip-safe
FunID.egg-info/requires.txt
FunID.egg-info/top_level.txt
funid/FunID_GUI.py
funid/__init__.py
funid/main.py
funid/data/Option_manager.xlsx
funid/data/__init__.py
funid/data/genus_line.txt
funid/external/MAFFT_LICENSE
funid/external/MAFFT_Windows.zip
funid/external/__init__.py
funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe
funid/external/BLAST_Windows/bin/blastn.exe
funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py
funid/external/BLAST_Windows/bin/get_species_taxids.sh
funid/external/BLAST_Windows/bin/legacy_blast.pl
funid/external/BLAST_Windows/bin/makeblastdb.exe
funid/external/BLAST_Windows/bin/nghttp2.dll
funid/external/BLAST_Windows/bin/update_blastdb.pl
funid/external/BLAST_Windows/doc/README.txt
funid/external/FastTree_Windows/FastTree.exe
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir
funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir
funid/external/RAxML_Windows/GPL-3.0.txt
funid/external/RAxML_Windows/README
funid/external/RAxML_Windows/raxmlHPC-AVX.exe
funid/external/RAxML_Windows/raxmlHPC-AVX2.exe
funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe
funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe
funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe
funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe
funid/external/RAxML_Windows/raxmlHPC-SSE3.exe
funid/external/RAxML_Windows/raxmlHPC.exe
funid/external/iqtree-2.1.3-Windows/example.cf
funid/external/iqtree-2.1.3-Windows/example.nex
funid/external/iqtree-2.1.3-Windows/example.phy
funid/external/iqtree-2.1.3-Windows/models.nex
funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe
funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe
funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll
funid/external/mmseqs_Windows/LICENSE.md
funid/external/mmseqs_Windows/README.md
funid/external/mmseqs_Windows/mmseqs.bat
funid/external/mmseqs_Windows/userguide.pdf
funid/external/mmseqs_Windows/bin/busybox.exe
funid/external/mmseqs_Windows/bin/cygbz2-1.dll
funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll
funid/external/mmseqs_Windows/bin/cyggomp-1.dll
funid/external/mmseqs_Windows/bin/cygstdc++-6.dll
funid/external/mmseqs_Windows/bin/cygwin1.dll
funid/external/mmseqs_Windows/bin/cygz.dll
funid/external/mmseqs_Windows/bin/mmseqs.exe
funid/external/mmseqs_Windows/examples/QUERY.fasta
funid/external/mmseqs_Windows/matrices/PAM10.out
funid/external/mmseqs_Windows/matrices/PAM100.out
funid/external/mmseqs_Windows/matrices/PAM110.out
funid/external/mmseqs_Windows/matrices/PAM120.out
funid/external/mmseqs_Windows/matrices/PAM130.out
funid/external/mmseqs_Windows/matrices/PAM140.out
funid/external/mmseqs_Windows/matrices/PAM150.out
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funid/external/mmseqs_Windows/matrices/PAM180.out
funid/external/mmseqs_Windows/matrices/PAM190.out
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funid/external/mmseqs_Windows/matrices/PAM50.out
funid/external/mmseqs_Windows/matrices/PAM60.out
funid/external/mmseqs_Windows/matrices/PAM70.out
funid/external/mmseqs_Windows/matrices/PAM80.out
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funid/external/mmseqs_Windows/matrices/VTML10.out
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funid/external/mmseqs_Windows/matrices/VTML160.out
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funid/external/mmseqs_Windows/matrices/VTML40.out
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funid/external/mmseqs_Windows/matrices/blosum100.out
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funid/external/mmseqs_Windows/matrices/blosum45.out
funid/external/mmseqs_Windows/matrices/blosum50.out
funid/external/mmseqs_Windows/matrices/blosum55.out
funid/external/mmseqs_Windows/matrices/blosum60.out
funid/external/mmseqs_Windows/matrices/blosum62.out
funid/external/mmseqs_Windows/matrices/blosum65.out
funid/external/mmseqs_Windows/matrices/blosum70.out
funid/external/mmseqs_Windows/matrices/blosum75.out
funid/external/mmseqs_Windows/matrices/blosum80.out
funid/external/mmseqs_Windows/matrices/blosum85.out
funid/external/mmseqs_Windows/matrices/blosum90.out
funid/external/mmseqs_Windows/matrices/blosum95.out
funid/external/mmseqs_Windows/matrices/nucleotide.out
funid/external/mmseqs_Windows/util/bash-completion.sh
funid/external/trimal.v1.2rev59/trimAl/AUTHORS
funid/external/trimal.v1.2rev59/trimAl/CHANGELOG
funid/external/trimal.v1.2rev59/trimAl/LICENSE
funid/external/trimal.v1.2rev59/trimAl/README
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funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe
funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw
funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl
funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2
funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat
funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw
funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl
funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy
funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1
funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2
funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3
funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2
funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2
funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp
funid/external/trimal.v1.2rev59/trimAl/source/alignment.h
funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp
funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp
funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h
funid/external/trimal.v1.2rev59/trimAl/source/main.cpp
funid/external/trimal.v1.2rev59/trimAl/source/makefile
funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp
funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp
funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp
funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h
funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp
funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h
funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp
funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h
funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp
funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h
funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp
funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h
funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp
funid/external/trimal.v1.2rev59/trimAl/source/utils.h
funid/external/trimal.v1.2rev59/trimAl/source/values.h
funid/preset/accurate.yaml
funid/preset/fast.yaml
funid/src/__init__.py
funid/src/align.py
funid/src/cluster.py
funid/src/command.py
funid/src/dataset.py
funid/src/ext.py
funid/src/hasher.py
funid/src/initialize.py
funid/src/logger.py
funid/src/logics.py
funid/src/manage_input.py
funid/src/modeltest.py
funid/src/multigene.py
funid/src/ncbi.py
funid/src/opt_generator.py
funid/src/patch.py
funid/src/reporter.py
funid/src/save.py
funid/src/search.py
funid/src/tool.py
funid/src/tree.py
funid/src/tree_interpretation.py
funid/src/tree_interpretation_pipe.py
funid/src/trim.py
funid/src/validate_option.py
funid/src/validation.py
funid/test_dataset/penicillium/Options.config
funid/test_dataset/penicillium/preset.yaml
funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx
funid/test_dataset/penicillium/Query/Query.xlsx