Metadata-Version: 2.1
Name: DARtTool
Version: 0.0.2
Summary: A tool to estimate Instantaneous Reproduction Number(Rt) for the pandemic
Home-page: https://github.com/Kerr93/DARt/tree/master/DARt
Author: Xian Yang, Shuo Wang, Yuting Xing, Ling Li, Richard Yi Da Xu, Karl J.Friston and Yike Guo
Author-email: y.xing19@imperial.ac.uk
License: UNKNOWN
Description: A tool to estimate Instantaneous Reproduction Number(Rt)
        ========================================================
        
        cal\_r() provide real-time estimation of time-varying distribution of Rt
        and infected numbers from a range of epidemic observations (e.g., Onset or report cases).
        
        It provides:
        --------
        
        A wide range of observations;
        
        R\_t estimation taking into account the accuracy of time alignment and abrupt change;
        
        A smooth R\_t curve together with its posterior distribution.
        
        Usage
        -----
        
        dart = DARtTool.DARt(filename='input.csv')
        
        dart.cal\_r()
        
        dart.plot()
        
        
        Examples of input file
        --------
        Input file should contain date and corresponding
        observations, the date should be sorted from the oldest to the latest.
        See 'Example\_input.csv':
        
        ::
        
            date	newCasesByPublishDate
            2021/1/1	53285
            2021/1/2	57725
            2021/1/3	54990
            2021/1/4	58784
            2021/1/5	60916
            2021/1/6	62322
            2021/1/7	52618
            2021/1/8	68053
            2021/1/9	59937
            2021/1/10	54940
            2021/1/11	46169
            2021/1/12	45533
            2021/1/13	47525
            2021/1/14	48682
            2021/1/15	55761
            2021/1/16	41346
            2021/1/17	38598
            2021/1/18	37535
            2021/1/19	33355
            2021/1/20	38905
            2021/1/21	37892
            2021/1/22	40261
            2021/1/23	33552
            2021/1/24	30004
            2021/1/25	22195
            2021/1/26	20089
            2021/1/27	25308
            2021/1/28	28680
            2021/1/29	29079
            2021/1/30	23275
            2021/1/31	21088
            2021/2/1	18607
            2021/2/2	16840
            2021/2/3	19202
            2021/2/4	20634
            2021/2/5	19114
            2021/2/6	18262
            2021/2/7	15845
            2021/2/8	14104
            2021/2/9	12364
            2021/2/10	13013
            2021/2/11	13494
            2021/2/12	15144
            2021/2/13	13308
            2021/2/14	10972
            2021/2/15	9765
            2021/2/16	10625
            2021/2/17	12718
            2021/2/18	12057
            2021/2/19	12027
            2021/2/20	10406
            2021/2/21	9834
            2021/2/22	10641
            2021/2/23	8489
            2021/2/24	9938
            2021/2/25	9985
            2021/2/26	8523
            2021/2/27	7434
            2021/2/28	6035
            2021/3/1	5455
            2021/3/2	6391
            2021/3/3	6385
            2021/3/4	6573
            2021/3/5	5947
            2021/3/6	6040
            2021/3/7	5177
            2021/3/8	4712
            2021/3/9	5766
            2021/3/10	5926
            2021/3/11	6753
            2021/3/12	6609
            2021/3/13	5534
            2021/3/14	4618
            2021/3/15	5089
            2021/3/16	5294
            2021/3/17	5758
            2021/3/18	6303
            2021/3/19	4802
            2021/3/20	5587
            2021/3/21	5312
            2021/3/22	5342
        
        
        
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
