CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
taca/__init__.py
taca/cli.py
taca.egg-info/PKG-INFO
taca.egg-info/SOURCES.txt
taca.egg-info/dependency_links.txt
taca.egg-info/entry_points.txt
taca.egg-info/not-zip-safe
taca.egg-info/requires.txt
taca.egg-info/top_level.txt
taca/analysis/__init__.py
taca/analysis/analysis.py
taca/analysis/analysis_nanopore.py
taca/analysis/cli.py
taca/backup/__init__.py
taca/backup/backup.py
taca/backup/cli.py
taca/cleanup/__init__.py
taca/cleanup/cleanup.py
taca/cleanup/cli.py
taca/illumina/HiSeqX_Runs.py
taca/illumina/HiSeq_Runs.py
taca/illumina/MiSeq_Runs.py
taca/illumina/NextSeq_Runs.py
taca/illumina/NovaSeq_Runs.py
taca/illumina/Runs.py
taca/illumina/__init__.py
taca/log/__init__.py
taca/server_status/__init__.py
taca/server_status/cli.py
taca/server_status/cronjobs.py
taca/server_status/server_status.py
taca/testing/__init__.py
taca/testing/cli.py
taca/testing/create_uppmax_like_env.py
taca/utils/__init__.py
taca/utils/bioinfo_tab.py
taca/utils/cli.py
taca/utils/config.py
taca/utils/filesystem.py
taca/utils/minion_barcodes.py
taca/utils/misc.py
taca/utils/statusdb.py
taca/utils/transfer.py
tests/test_analysis.py
tests/test_analysis_nanopore.py
tests/test_backup.py
tests/test_cleanup.py
tests/test_illumina.py
tests/test_server_status.py
tests/test_utils.py
tests/data/DemuxSummaryF1L1.txt
tests/data/RunInfo.xml
tests/data/Stats.json
tests/data/lane.html
tests/data/laneBarcode.html
tests/data/lane_result.html
tests/data/miseq_samplesheet.csv
tests/data/miseq_test_samplesheet.csv
tests/data/runParameters.xml
tests/data/runParameters_hiseq.xml
tests/data/runParameters_minimal.xml
tests/data/runParameters_miseq.xml
tests/data/runParameters_nextseq.xml
tests/data/runParameters_novaseq.xml
tests/data/samplesheet.csv
tests/data/samplesheet_dual_index.csv
tests/data/samplesheet_dummy_run.csv
tests/data/samplesheet_sample_check.csv
tests/data/taca_test_cfg.yaml
tests/data/taca_test_cfg_backup.yaml
tests/data/taca_test_cfg_cleanup.yaml
tests/data/taca_test_cfg_minimal.yaml
tests/data/taca_test_nanopore_cfg.yaml
tests/data/test_10X_indexes
tests/data/test_smartseq_indexes
tests/data/test_transfer.tsv
tests/data/transfer.tsv
tests/data/2014/FCIDXX.csv
tests/data/2014/FCIDYX.csv
tests/data/2014/HISEQFCIDXX.csv
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tests/data/2019/HHFCFDSXX.csv
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tests/data/irma/incoming/190201_A00621_0032_BHHFCFDSXX/Demultiplexing/N.Owens_19_01/sample2.fastq.gz
tests/data/irma/nobackup/NGI/ANALYSIS/P1234/sample1.bam
tests/data/nanopore_data/transfer.tsv
tests/data/nanopore_data/run1/still_sequencing/20200101_1412_MN19414_AAU641_68125dc2/squigglefile.fast5
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tests/data/nanopore_data/run2/done_sequencing/20200102_1412_MN19414_AAU642_68125dc2/finished_sequencing_and_ready_to_analyse
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