LICENSE
README.md
setup.py
cazomevolve/__init__.py
cazomevolve.egg-info/PKG-INFO
cazomevolve.egg-info/SOURCES.txt
cazomevolve.egg-info/dependency_links.txt
cazomevolve.egg-info/entry_points.txt
cazomevolve.egg-info/requires.txt
cazomevolve.egg-info/top_level.txt
cazomevolve/cazome/__init__.py
cazomevolve/cazome/cazy/__init__.py
cazomevolve/cazome/cazy/get_cazy_cazymes.py
cazomevolve/cazome/dbcan/__init__.py
cazomevolve/cazome/dbcan/get_dbcan_cazymes.py
cazomevolve/cazome/dbcan/invoke_dbcan.py
cazomevolve/cazome/explore/__init__.py
cazomevolve/cazome/explore/cazome_sizes.py
cazomevolve/cazome/explore/cazy_classes.py
cazomevolve/cazome/explore/cazy_families.py
cazomevolve/cazome/explore/cooccurring_families.py
cazomevolve/cazome/explore/explore_cazomes.py
cazomevolve/cazome/explore/parse_data.py
cazomevolve/cazome/explore/pca.py
cazomevolve/genomes/__init__.py
cazomevolve/genomes/download_genomes.py
cazomevolve/scripts/__init__.py
cazomevolve/scripts/build_cazy_db.py
cazomevolve/scripts/cazomevolve_script.py
cazomevolve/scripts/download_acc_genomes.py
cazomevolve/scripts/get_fam_seqs.py
cazomevolve/scripts/run_fam_blast.py
cazomevolve/scripts/run_fam_diamond.py
cazomevolve/scripts/bash/build_cazy_db.sh
cazomevolve/scripts/bash/download_acc_genomes.sh
cazomevolve/scripts/tree/ani/build_anim_tree.R
cazomevolve/scripts/tree/ani/run_anim.sh
cazomevolve/scripts/tree/phylo/align_scos.sh
cazomevolve/scripts/tree/phylo/annotate_genomes.sh
cazomevolve/scripts/tree/phylo/backtranslate.sh
cazomevolve/scripts/tree/phylo/concatenate_cds.py
cazomevolve/scripts/tree/phylo/extract_cds.py
cazomevolve/scripts/tree/phylo/find_orthologues.sh
cazomevolve/scripts/tree/phylo/raxml_ng_build_tree.sh
cazomevolve/seq_diversity/__init__.py
cazomevolve/seq_diversity/get_fam_seqs.sh
cazomevolve/seq_diversity/run_blastp.sh
cazomevolve/seq_diversity/run_diamond.sh
cazomevolve/seq_diversity/explore/__init__.py
cazomevolve/seq_diversity/explore/cazy.py
cazomevolve/seq_diversity/explore/parse.py
cazomevolve/seq_diversity/explore/plot.py
cazomevolve/taxs/__init__.py
cazomevolve/taxs/add_taxs.py
cazomevolve/taxs/ncbi.py
cazomevolve/utilities/__init__.py
cazomevolve/utilities/parsers/__init__.py
cazomevolve/utilities/parsers/add_taxs_parser.py
cazomevolve/utilities/parsers/build_cazy_db_parser.py
cazomevolve/utilities/parsers/dl_acc_genomes_parser.py
cazomevolve/utilities/parsers/download_genomes_parser.py
cazomevolve/utilities/parsers/explore_cazomes_parser.py
cazomevolve/utilities/parsers/get_cazy_parser.py
cazomevolve/utilities/parsers/get_dbcan_parser.py
cazomevolve/utilities/parsers/get_fam_seqs_parser.py
cazomevolve/utilities/parsers/invoke_dbcan_parser.py
cazomevolve/utilities/parsers/parse_cmd.py
cazomevolve/utilities/parsers/run_blast_parser.py
cazomevolve/utilities/parsers/run_diamond_parser.py
tests/test_add_taxs.py
tests/test_cazomevolve.py
tests/test_explore_cazome_sizes.py
tests/test_explore_cazomes.py
tests/test_explore_classes.py
tests/test_explore_cooccurring_families.py
tests/test_explore_families.py
tests/test_explore_parse_data.py
tests/test_explore_pca.py
tests/test_explore_upsetplot.py
tests/test_genome_download.py
tests/test_get_cazy.py
tests/test_get_dbcan.py
tests/test_invoke_dbcan.py
tests/test_ncbi.py
tests/test_parser.py
tests/test_scripts.py
tests/test_seq_diversity.py