Metadata-Version: 1.2
Name: celloracle
Version: 0.11.0
Summary: in silico gene perturbation analysis and GRN analysis with single cell data
Home-page: https://github.com/morris-lab/CellOracle
Author: Kenji Kamimoto
Author-email: kamimoto@wustl.edu
License: Apache License Version 2.0
Description: CellOracle
        ==========
        
        |GitHub Workflow Status| |PyPI| |PyPI - Python Version| |PyPI - Wheel|
        |Downloads| |Docker Pulls|
        
        CellOracle is a python library for in silico gene perturbation analyses
        using single-cell omics data and Gene Regulatory Network models.
        
        For more information, please read our paper: `Dissecting cell identity
        via network inference and in silico gene
        perturbation <https://www.nature.com/articles/s41586-022-05688-9>`__.
        
        Documentation, Codes, and Tutorials
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        CellOracle documentation is available through the link below.
        
        `Web
        documentation <https://morris-lab.github.io/CellOracle.documentation/>`__
        
        Questions and errors
        ~~~~~~~~~~~~~~~~~~~~
        
        If you have a question, error, bug, or problem, please use the `Github
        issue page <https://github.com/morris-lab/CellOracle/issues>`__.
        
        Supported Species and reference genomes
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        -  Human: [‘hg38’, ‘hg19’]
        -  Mouse: [‘mm39’, ‘mm10’, ‘mm9’]
        -  S.cerevisiae: [“sacCer2”, “sacCer3”]
        -  Zebrafish: [“danRer7”, “danRer10”, “danRer11”]
        -  Xenopus tropicalis: [“xenTro2”, “xenTro3”]
        -  Xenopus laevis: [“Xenopus_laevis_v10.1”]
        -  Rat: [“rn4”, “rn5”, “rn6”]
        -  Drosophila: [“dm3”, “dm6”]
        -  C.elegans: [“ce6”, “ce10”]
        -  Arabidopsis: [“TAIR10”]
        -  Chicken: [“galGal4”, “galGal5”, “galGal6”]
        -  Guinea Pig: [“Cavpor3.0”]
        -  Pig: [“Sscrofa11.1”]
        
        Changelog
        ~~~~~~~~~
        
        Please go to `this
        page <https://morris-lab.github.io/CellOracle.documentation/changelog/index.html>`__.
        
        .. |GitHub Workflow Status| image:: https://img.shields.io/github/actions/workflow/status/morris-lab/CellOracle/build_check.yml?branch=master
           :target: https://github.com/morris-lab/CellOracle/actions/workflows/build_check.yml
        .. |PyPI| image:: https://img.shields.io/pypi/v/celloracle?color=blue
           :target: https://pypi.org/project/celloracle/
        .. |PyPI - Python Version| image:: https://img.shields.io/pypi/pyversions/celloracle
           :target: https://pypi.org/project/celloracle/
        .. |PyPI - Wheel| image:: https://img.shields.io/pypi/wheel/celloracle
           :target: https://pypi.org/project/celloracle/
        .. |Downloads| image:: https://static.pepy.tech/personalized-badge/celloracle?period=total&units=international_system&left_color=grey&right_color=orange&left_text=Downloads
           :target: https://pepy.tech/project/celloracle
        .. |Docker Pulls| image:: https://img.shields.io/docker/pulls/kenjikamimoto126/celloracle_ubuntu?color=red
           :target: https://hub.docker.com/r/kenjikamimoto126/celloracle_ubuntu
        
Keywords: scRNA-seq,GRN,simulation,gene perturbation
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6
