LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
docs/conf.py
examples/basic_usage.py
examples/rtd_tutorial.py
examples/tutorial.py
examples/publication/salivary_gland_tumors.py
examples/publication/scc.py
examples/publication/soft_tissue_tumors.py
mepylome/__init__.py
mepylome/cli.py
mepylome.egg-info/PKG-INFO
mepylome.egg-info/SOURCES.txt
mepylome.egg-info/dependency_links.txt
mepylome.egg-info/entry_points.txt
mepylome.egg-info/requires.txt
mepylome.egg-info/top_level.txt
mepylome/analysis/__init__.py
mepylome/analysis/methyl.py
mepylome/analysis/methyl_aux.py
mepylome/analysis/methyl_clf.py
mepylome/analysis/methyl_plots.py
mepylome/data/config.toml
mepylome/data/gaps.csv.gz
mepylome/data/hg19_genes.tsv.gz
mepylome/data/methylation_class_acronyms.tsv.gz
mepylome/data/tutorial.csv.gz
mepylome/data/assets/dropdown.css
mepylome/data/assets/favicon.svg
mepylome/data/assets/mepylome.svg
mepylome/data/assets/mepylome_raw.svg
mepylome/dtypes/__init__.py
mepylome/dtypes/arrays.py
mepylome/dtypes/beads.py
mepylome/dtypes/cache.py
mepylome/dtypes/chromosome.py
mepylome/dtypes/cnv.py
mepylome/dtypes/idat.py
mepylome/dtypes/manifests.py
mepylome/dtypes/plots.py
mepylome/dtypes/probes.py
mepylome/tests/__init__.py
mepylome/tests/helpers.py
mepylome/tests/write_idat.py
mepylome/utils/__init__.py
mepylome/utils/files.py
mepylome/utils/varia.py
pybindings/pybind11ings.cpp
scripts/convert_py_to_rst.py
scripts/get_all_betas.py
scripts/diagnostics/run_methylation_diagnostics.py
src/__init__.py
src/idat_parser.cpp
src/idat_parser.h
tests/test_beads.py
tests/test_idat.py
tests/test_manifests.py
tests/benchmark/correctness.py
tests/benchmark/swan.py
tests/benchmark/test_cnv.py
tests/benchmark/test_idat_extraction.py
trash/cartilage_tumours.py
trash/profile_script.py
trash/test.py
trash/trash.py
trash/trash_clf.py