CONTRIBUTING.rst
MANIFEST.in
README.rst
requirements.txt
requirements_dev.txt
setup.cfg
setup.py
bioconvert/__init__.py
bioconvert/abi2fasta.py
bioconvert/abi2fastq.py
bioconvert/abi2qual.py
bioconvert/bam2bedgraph.py
bioconvert/bam2bigwig.py
bioconvert/bam2cov.py
bioconvert/bam2cram.py
bioconvert/bam2fasta.py
bioconvert/bam2fastq.py
bioconvert/bam2json.py
bioconvert/bam2sam.py
bioconvert/bam2tsv.py
bioconvert/bam2wiggle.py
bioconvert/bcf2vcf.py
bioconvert/bcf2wiggle.py
bioconvert/bed2wiggle.py
bioconvert/bedgraph2bigwig.py
bioconvert/bedgraph2cov.py
bioconvert/bedgraph2wiggle.py
bioconvert/bigbed2bed.py
bioconvert/bigbed2wiggle.py
bioconvert/bigwig2bedgraph.py
bioconvert/bigwig2wiggle.py
bioconvert/bplink2plink.py
bioconvert/bplink2vcf.py
bioconvert/bz22gz.py
bioconvert/clustal2fasta.py
bioconvert/clustal2nexus.py
bioconvert/clustal2phylip.py
bioconvert/clustal2stockholm.py
bioconvert/cram2bam.py
bioconvert/cram2fasta.py
bioconvert/cram2fastq.py
bioconvert/cram2sam.py
bioconvert/csv2tsv.py
bioconvert/csv2xls.py
bioconvert/dsrc2gz.py
bioconvert/embl2fasta.py
bioconvert/embl2genbank.py
bioconvert/fasta2clustal.py
bioconvert/fasta2faa.py
bioconvert/fasta2fasta_agp.py
bioconvert/fasta2fastq.py
bioconvert/fasta2genbank.py
bioconvert/fasta2nexus.py
bioconvert/fasta2phylip.py
bioconvert/fasta2twobit.py
bioconvert/fasta_qual2fastq.py
bioconvert/fastq2fasta.py
bioconvert/fastq2fasta_qual.py
bioconvert/fastq2qual.py
bioconvert/genbank2embl.py
bioconvert/genbank2fasta.py
bioconvert/genbank2gff3.py
bioconvert/gfa2fasta.py
bioconvert/gff22gff3.py
bioconvert/gff32gff2.py
bioconvert/gz2bz2.py
bioconvert/gz2dsrc.py
bioconvert/json2yaml.py
bioconvert/maf2sam.py
bioconvert/newick2nexus.py
bioconvert/newick2phyloxml.py
bioconvert/nexus2clustal.py
bioconvert/nexus2fasta.py
bioconvert/nexus2newick.py
bioconvert/nexus2phylip.py
bioconvert/nexus2phyloxml.py
bioconvert/ods2csv.py
bioconvert/phylip2clustal.py
bioconvert/phylip2fasta.py
bioconvert/phylip2nexus.py
bioconvert/phylip2stockholm.py
bioconvert/phylip2xmfa.py
bioconvert/phyloxml2newick.py
bioconvert/phyloxml2nexus.py
bioconvert/plink2bplink.py
bioconvert/plink2vcf.py
bioconvert/sam2bam.py
bioconvert/sam2cram.py
bioconvert/sam2paf.py
bioconvert/scf2fasta.py
bioconvert/scf2fastq.py
bioconvert/sra2fastq.py
bioconvert/stockholm2clustal.py
bioconvert/stockholm2phylip.py
bioconvert/tsv2csv.py
bioconvert/twobit2fasta.py
bioconvert/vcf2bcf.py
bioconvert/vcf2bed.py
bioconvert/vcf2bplink.py
bioconvert/vcf2plink.py
bioconvert/vcf2wiggle.py
bioconvert/wig2bed.py
bioconvert/xls2csv.py
bioconvert/xlsx2csv.py
bioconvert/xmfa2phylip.py
bioconvert/yaml2json.py
bioconvert.egg-info/PKG-INFO
bioconvert.egg-info/SOURCES.txt
bioconvert.egg-info/dependency_links.txt
bioconvert.egg-info/entry_points.txt
bioconvert.egg-info/not-zip-safe
bioconvert.egg-info/requires.txt
bioconvert.egg-info/top_level.txt
bioconvert/core/__init__.py
bioconvert/core/base.py
bioconvert/core/benchmark.py
bioconvert/core/converter.py
bioconvert/core/decorators.py
bioconvert/core/downloader.py
bioconvert/core/extensions.py
bioconvert/core/graph.py
bioconvert/core/init.py
bioconvert/core/levenshtein.py
bioconvert/core/registry.py
bioconvert/core/shell.py
bioconvert/core/utils.py
bioconvert/data/README.rst
bioconvert/data/__init__.py
bioconvert/data/measles.chrom.sizes
bioconvert/data/test.bigwig
bioconvert/data/test_SP1.fq.gz
bioconvert/data/test_gfa2fasta_v1.gfa
bioconvert/data/test_measles.fa.fai
bioconvert/data/test_measles.sorted.bam
bioconvert/data/testing/__init__.py
bioconvert/data/testing/genbank2fasta/__init__.py
bioconvert/data/testing/sam2paf/__init__.py
bioconvert/data/testing/sam2paf/create_files.sh
bioconvert/io/__init__.py
bioconvert/io/fasta.py
bioconvert/io/genbank.py
bioconvert/io/gff2.py
bioconvert/io/gff3.py
bioconvert/io/maf.py
bioconvert/io/scf.py
bioconvert/misc/README.rst
bioconvert/misc/__init__.py
bioconvert/misc/cython_fastq2fasta.pyx
bioconvert/misc/fastq2fasta.c
bioconvert/misc/fastq2fasta.pl
bioconvert/misc/install_goalign.sh
bioconvert/misc/install_gotree.sh
bioconvert/scripts/__init__.py
bioconvert/scripts/converter.py
bioconvert/scripts/init_convert.py
bioconvert/scripts/stats.py
bioconvert/simulator/__init__.py
bioconvert/simulator/fasta.py
bioconvert/simulator/fastq.py
bioconvert/simulator/gfa.py
bioconvert/utils/__init__.py
bioconvert/utils/biocode/__init__.py
bioconvert/utils/biocode/annotation.py
bioconvert/utils/biocode/convert_genbank_to_gff3.py
bioconvert/utils/biocode/gff.py
bioconvert/utils/biocode/tbl.py
bioconvert/utils/biocode/things.py
bioconvert/utils/biocode/utils.py
examples/README.txt
examples/conversion.dot
examples/plot_benchmark.py
examples/plot_graph.py
examples/plot_graph_clustered.py
examples/plot_graph_colored.py
examples/plot_methods.py
examples/test.cov