LICENSE.txt
README.md
pyproject.toml
setup.py
dexp/__init__.py
dexp/conftest.py
dexp.egg-info/PKG-INFO
dexp.egg-info/SOURCES.txt
dexp.egg-info/dependency_links.txt
dexp.egg-info/entry_points.txt
dexp.egg-info/requires.txt
dexp.egg-info/top_level.txt
dexp/cli/__init__.py
dexp/cli/config.py
dexp/cli/defaults.py
dexp/cli/dexp_main.py
dexp/cli/install_main.py
dexp/cli/parsing.py
dexp/cli/video_main.py
dexp/cli/dexp_commands/__init__.py
dexp/cli/dexp_commands/add.py
dexp/cli/dexp_commands/background.py
dexp/cli/dexp_commands/check.py
dexp/cli/dexp_commands/copy.py
dexp/cli/dexp_commands/crop.py
dexp/cli/dexp_commands/deconv.py
dexp/cli/dexp_commands/denoise.py
dexp/cli/dexp_commands/deskew.py
dexp/cli/dexp_commands/extract_psf.py
dexp/cli/dexp_commands/fastcopy.py
dexp/cli/dexp_commands/fromraw.py
dexp/cli/dexp_commands/fuse.py
dexp/cli/dexp_commands/generic.py
dexp/cli/dexp_commands/histogram.py
dexp/cli/dexp_commands/info.py
dexp/cli/dexp_commands/projrender.py
dexp/cli/dexp_commands/register.py
dexp/cli/dexp_commands/segment.py
dexp/cli/dexp_commands/speedtest.py
dexp/cli/dexp_commands/stabilize.py
dexp/cli/dexp_commands/tiff.py
dexp/cli/dexp_commands/view.py
dexp/cli/video_commands/__init__.py
dexp/cli/video_commands/blend.py
dexp/cli/video_commands/mp4.py
dexp/cli/video_commands/overlay.py
dexp/cli/video_commands/resize.py
dexp/cli/video_commands/stack.py
dexp/cli/video_commands/volrender.py
dexp/datasets/__init__.py
dexp/datasets/base_dataset.py
dexp/datasets/clearcontrol_dataset.py
dexp/datasets/joined_dataset.py
dexp/datasets/ome_dataset.py
dexp/datasets/open_dataset.py
dexp/datasets/stack_iterator.py
dexp/datasets/tiff_dataset.py
dexp/datasets/zarr_dataset.py
dexp/datasets/demo/demo_dataset.py
dexp/datasets/operations/__init__.py
dexp/datasets/operations/background.py
dexp/datasets/operations/copy.py
dexp/datasets/operations/crop.py
dexp/datasets/operations/deconv.py
dexp/datasets/operations/denoise.py
dexp/datasets/operations/deskew.py
dexp/datasets/operations/extract_psf.py
dexp/datasets/operations/fromraw.py
dexp/datasets/operations/fuse.py
dexp/datasets/operations/generic.py
dexp/datasets/operations/histogram.py
dexp/datasets/operations/projrender.py
dexp/datasets/operations/register.py
dexp/datasets/operations/segment.py
dexp/datasets/operations/stabilize.py
dexp/datasets/operations/tiff.py
dexp/datasets/operations/view.py
dexp/datasets/operations/demo/demo_copy.py
dexp/datasets/operations/demo/demo_deconv.py
dexp/datasets/operations/demo/demo_deskew.py
dexp/datasets/operations/demo/demo_deskew_real.py
dexp/datasets/operations/demo/demo_projrender.py
dexp/datasets/operations/demo/demo_stabilize.py
dexp/datasets/operations/demo/demo_tiff.py
dexp/datasets/synthetic_datasets/__init__.py
dexp/datasets/synthetic_datasets/binary_blobs.py
dexp/datasets/synthetic_datasets/dexp_dataset.py
dexp/datasets/synthetic_datasets/multiview_data.py
dexp/datasets/synthetic_datasets/nuclei_background_data.py
dexp/io/__init__.py
dexp/io/compress_array.py
dexp/io/io.py
dexp/optics/__init__.py
dexp/optics/psf/__init__.py
dexp/optics/psf/microscope_psf.py
dexp/optics/psf/standard_psfs.py
dexp/optics/psf/demo/demo.py
dexp/processing/__init__.py
dexp/processing/color/__init__.py
dexp/processing/color/blend.py
dexp/processing/color/border.py
dexp/processing/color/cairo_utils.py
dexp/processing/color/colormap.py
dexp/processing/color/conversions.py
dexp/processing/color/crop_resize_pad.py
dexp/processing/color/insert.py
dexp/processing/color/projection.py
dexp/processing/color/projection_legend.py
dexp/processing/color/scale_bar.py
dexp/processing/color/time_stamp.py
dexp/processing/color/demo/demo_blend.py
dexp/processing/color/demo/demo_border.py
dexp/processing/color/demo/demo_colormap.py
dexp/processing/color/demo/demo_crop_resize_pad.py
dexp/processing/color/demo/demo_insert.py
dexp/processing/color/demo/demo_projection.py
dexp/processing/color/demo/demo_scale_bar.py
dexp/processing/color/demo/demo_time_stamp.py
dexp/processing/crop/__init__.py
dexp/processing/crop/background.py
dexp/processing/crop/representative_crop.py
dexp/processing/crop/_test/__init__.py
dexp/processing/crop/_test/test_rep_crop.py
dexp/processing/crop/demo/__init__.py
dexp/processing/crop/demo/demo_rep_crop.py
dexp/processing/deconvolution/__init__.py
dexp/processing/deconvolution/admm_deconvolution.py
dexp/processing/deconvolution/admm_utils.py
dexp/processing/deconvolution/blind_deconvolution.py
dexp/processing/deconvolution/inversion_deconvolution.py
dexp/processing/deconvolution/lr_deconvolution.py
dexp/processing/deconvolution/demo/demo_admm_deconvolution_3d.py
dexp/processing/deconvolution/demo/demo_blind_deconv_3d.py
dexp/processing/deconvolution/demo/demo_inversion_deconvolution_3d.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_2d.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_2d_bs.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_2d_wb.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_3d.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_3d_bs.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_3d_sg.py
dexp/processing/deconvolution/demo/demo_lr_deconvolution_3d_wb.py
dexp/processing/denoising/__init__.py
dexp/processing/denoising/butterworth.py
dexp/processing/denoising/gaussian.py
dexp/processing/denoising/j_invariance.py
dexp/processing/denoising/metrics.py
dexp/processing/denoising/noise.py
dexp/processing/denoising/_test/__init__.py
dexp/processing/denoising/_test/test_butterworth.py
dexp/processing/denoising/_test/test_gaussian.py
dexp/processing/denoising/_test/test_noise.py
dexp/processing/denoising/demo/__init__.py
dexp/processing/denoising/demo/demo_2D_butterworth.py
dexp/processing/denoising/demo/demo_2D_gaussian.py
dexp/processing/denoising/demo/demo_3D_butterworth.py
dexp/processing/denoising/demo/demo_noise.py
dexp/processing/deskew/__init__.py
dexp/processing/deskew/classic_deskew.py
dexp/processing/deskew/utils.py
dexp/processing/deskew/yang_deskew.py
dexp/processing/deskew/demo/demo_classic_deskew.py
dexp/processing/deskew/demo/demo_yang_deskew.py
dexp/processing/equalise/__init__.py
dexp/processing/equalise/equalise_intensity.py
dexp/processing/equalise/demo/demo_equalise_intensity.py
dexp/processing/filters/__init__.py
dexp/processing/filters/butterworth_filter.py
dexp/processing/filters/fft_convolve.py
dexp/processing/filters/sobel_filter.py
dexp/processing/filters/demo/demo_butterworth_filter.py
dexp/processing/filters/demo/demo_fft_convolve.py
dexp/processing/filters/demo/demo_sobel.py
dexp/processing/filters/kernels/__init__.py
dexp/processing/filters/kernels/butterworth.py
dexp/processing/filters/kernels/gaussian.py
dexp/processing/filters/kernels/wiener.py
dexp/processing/filters/kernels/wiener_butterworth.py
dexp/processing/filters/kernels/demo/demo_butterworth.py
dexp/processing/filters/kernels/demo/demo_gaussian.py
dexp/processing/filters/kernels/demo/demo_wiener.py
dexp/processing/filters/kernels/demo/demo_wiener_butterworth.py
dexp/processing/fusion/__init__.py
dexp/processing/fusion/dct_fusion.py
dexp/processing/fusion/dft_fusion.py
dexp/processing/fusion/tg_fusion.py
dexp/processing/fusion/demo/demo_fusion.py
dexp/processing/interpolation/__init__.py
dexp/processing/interpolation/warp.py
dexp/processing/interpolation/_cupy/__init__.py
dexp/processing/interpolation/_cupy/warp_1d.py
dexp/processing/interpolation/_cupy/warp_2d.py
dexp/processing/interpolation/_cupy/warp_3d.py
dexp/processing/interpolation/demo/demo_warp_1d.py
dexp/processing/interpolation/demo/demo_warp_2d.py
dexp/processing/interpolation/demo/demo_warp_3d.py
dexp/processing/morphology/__init__.py
dexp/processing/morphology/component_tree.py
dexp/processing/morphology/utils.py
dexp/processing/multiview_lightsheet/__init__.py
dexp/processing/multiview_lightsheet/deconvolution/__init__.py
dexp/processing/multiview_lightsheet/deconvolution/demo/demo_simview_deconv.py
dexp/processing/multiview_lightsheet/fusion/__init__.py
dexp/processing/multiview_lightsheet/fusion/basefusion.py
dexp/processing/multiview_lightsheet/fusion/mvsols.py
dexp/processing/multiview_lightsheet/fusion/simview.py
dexp/processing/multiview_lightsheet/fusion/demo/demo_mvsols_fusion.py
dexp/processing/multiview_lightsheet/fusion/demo/demo_simview_fusion.py
dexp/processing/optimization/__init__.py
dexp/processing/optimization/grid_search.py
dexp/processing/registration/__init__.py
dexp/processing/registration/sequence.py
dexp/processing/registration/sequence_proj.py
dexp/processing/registration/translation_2d.py
dexp/processing/registration/translation_nd.py
dexp/processing/registration/translation_nd_proj.py
dexp/processing/registration/warp_multiscale_nd.py
dexp/processing/registration/warp_nd.py
dexp/processing/registration/demo/demo_sequence_2d.py
dexp/processing/registration/demo/demo_sequence_3d.py
dexp/processing/registration/demo/demo_translation_2d.py
dexp/processing/registration/demo/demo_translation_3d.py
dexp/processing/registration/demo/demo_translation_3d_proj.py
dexp/processing/registration/demo/demo_translation_3d_proj_difficult.py
dexp/processing/registration/demo/demo_warp_2d.py
dexp/processing/registration/demo/demo_warp_2d_blobs.py
dexp/processing/registration/demo/demo_warp_3d.py
dexp/processing/registration/demo/demo_warp_ms_2d.py
dexp/processing/registration/demo/demo_warp_ms_3d.py
dexp/processing/registration/model/__init__.py
dexp/processing/registration/model/model_io.py
dexp/processing/registration/model/pairwise_registration_model.py
dexp/processing/registration/model/sequence_registration_model.py
dexp/processing/registration/model/translation_registration_model.py
dexp/processing/registration/model/warp_registration_model.py
dexp/processing/registration/model/demo/demo_translation_model.py
dexp/processing/registration/model/demo/demo_warp_model.py
dexp/processing/remove_beads/__init__.py
dexp/processing/remove_beads/beadsremover.py
dexp/processing/restoration/__init__.py
dexp/processing/restoration/aap_correction.py
dexp/processing/restoration/clean_dark_regions.py
dexp/processing/restoration/dehazing.py
dexp/processing/restoration/lipshitz_correction.py
dexp/processing/restoration/demo/demo_aap_correction.py
dexp/processing/restoration/demo/demo_clean_dark_regions.py
dexp/processing/restoration/demo/demo_dehaze.py
dexp/processing/restoration/demo/demo_lipschitz_continuity_correction.py
dexp/processing/segmentation/__init__.py
dexp/processing/segmentation/watershed.py
dexp/processing/utils/__init__.py
dexp/processing/utils/apply.py
dexp/processing/utils/blend_images.py
dexp/processing/utils/center_of_mass.py
dexp/processing/utils/element_wise_affine.py
dexp/processing/utils/fit_shape.py
dexp/processing/utils/linear_solver.py
dexp/processing/utils/mkl_util.py
dexp/processing/utils/nan_to_zero.py
dexp/processing/utils/nd_slice.py
dexp/processing/utils/normalise.py
dexp/processing/utils/pad.py
dexp/processing/utils/projection_generator.py
dexp/processing/utils/scatter_gather_i2i.py
dexp/processing/utils/scatter_gather_i2v.py
dexp/utils/__init__.py
dexp/utils/config.py
dexp/utils/dask.py
dexp/utils/fft.py
dexp/utils/lock.py
dexp/utils/misc.py
dexp/utils/robocopy.py
dexp/utils/slicing.py
dexp/utils/speed_test.py
dexp/utils/timeit.py
dexp/utils/backends/__init__.py
dexp/utils/backends/backend.py
dexp/utils/backends/best_backend.py
dexp/utils/backends/cupy_backend.py
dexp/utils/backends/numpy_backend.py
dexp/utils/backends/_cupy/__init__.py
dexp/utils/backends/_cupy/texture/__init__.py
dexp/utils/backends/_cupy/texture/texture.py
dexp/utils/testing/__init__.py
dexp/utils/testing/testing.py
dexp/video/__init__.py
dexp/video/blend.py
dexp/video/crop_resize_pad.py
dexp/video/overlay.py
dexp/video/demo/demo_blend.py
dexp/video/demo/demo_crop_resize_pad.py
dexp/video/demo/demo_overlay.py
dexp/volumerender/__init__.py
dexp/volumerender/quaternion.py
dexp/volumerender/transform_matrices.py
dexp/volumerender/volumerender.py
dexp/volumerender/demo/demo_volumerender.py