HISTORY.rst
LICENSE
MANIFEST.in
Makefile
README.rst
dev-requirements.txt
requirements.txt
setup.cfg
setup.py
galaxy/__init__.py
galaxy/project_galaxy_data.py
galaxy/datatypes/__init__.py
galaxy/datatypes/annotation.py
galaxy/datatypes/anvio.py
galaxy/datatypes/assembly.py
galaxy/datatypes/binary.py
galaxy/datatypes/blast.py
galaxy/datatypes/checkers.py
galaxy/datatypes/chrominfo.py
galaxy/datatypes/constructive_solid_geometry.py
galaxy/datatypes/coverage.py
galaxy/datatypes/data.py
galaxy/datatypes/genetics.py
galaxy/datatypes/gis.py
galaxy/datatypes/graph.py
galaxy/datatypes/images.py
galaxy/datatypes/interval.py
galaxy/datatypes/isa.py
galaxy/datatypes/metadata.py
galaxy/datatypes/microarrays.py
galaxy/datatypes/molecules.py
galaxy/datatypes/mothur.py
galaxy/datatypes/msa.py
galaxy/datatypes/neo4j.py
galaxy/datatypes/ngsindex.py
galaxy/datatypes/phylip.py
galaxy/datatypes/plant_tribes.py
galaxy/datatypes/proteomics.py
galaxy/datatypes/qualityscore.py
galaxy/datatypes/registry.py
galaxy/datatypes/sequence.py
galaxy/datatypes/set_metadata_tool.xml
galaxy/datatypes/sniff.py
galaxy/datatypes/spaln.py
galaxy/datatypes/tabular.py
galaxy/datatypes/text.py
galaxy/datatypes/tracks.py
galaxy/datatypes/triples.py
galaxy/datatypes/upload_util.py
galaxy/datatypes/xml.py
galaxy/datatypes/converters/__init__.py
galaxy/datatypes/converters/bam_to_bai.xml
galaxy/datatypes/converters/bam_to_bigwig_converter.xml
galaxy/datatypes/converters/bcf_to_bcf_uncompressed_converter.xml
galaxy/datatypes/converters/bcf_uncompressed_to_bcf_converter.xml
galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml
galaxy/datatypes/converters/bed_to_bgzip_converter.xml
galaxy/datatypes/converters/bed_to_fli_converter.xml
galaxy/datatypes/converters/bed_to_gff_converter.py
galaxy/datatypes/converters/bed_to_gff_converter.xml
galaxy/datatypes/converters/bed_to_interval_index_converter.xml
galaxy/datatypes/converters/bed_to_tabix_converter.xml
galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml
galaxy/datatypes/converters/bgzip.py
galaxy/datatypes/converters/biom1_to_biom2.xml
galaxy/datatypes/converters/biom2_to_biom1.xml
galaxy/datatypes/converters/bz2_to_uncompressed.xml
galaxy/datatypes/converters/cml_to_inchi_converter.xml
galaxy/datatypes/converters/cml_to_mol2_converter.xml
galaxy/datatypes/converters/cml_to_sdf_converter.xml
galaxy/datatypes/converters/cml_to_smi_converter.xml
galaxy/datatypes/converters/cram_to_bam.py
galaxy/datatypes/converters/cram_to_bam_converter.xml
galaxy/datatypes/converters/csv_to_tabular.xml
galaxy/datatypes/converters/dbkeys.loc.test
galaxy/datatypes/converters/encodepeak_to_bgzip_converter.xml
galaxy/datatypes/converters/encodepeak_to_tabix_converter.xml
galaxy/datatypes/converters/fasta_to_2bit.xml
galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml
galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml
galaxy/datatypes/converters/fasta_to_fai.xml
galaxy/datatypes/converters/fasta_to_len.py
galaxy/datatypes/converters/fasta_to_len.xml
galaxy/datatypes/converters/fasta_to_tabular_converter.py
galaxy/datatypes/converters/fasta_to_tabular_converter.xml
galaxy/datatypes/converters/fastq_to_fqtoc.py
galaxy/datatypes/converters/fastq_to_fqtoc.xml
galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py
galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml
galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py
galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml
galaxy/datatypes/converters/gff_to_bed_converter.py
galaxy/datatypes/converters/gff_to_bed_converter.xml
galaxy/datatypes/converters/gff_to_bgzip_converter.xml
galaxy/datatypes/converters/gff_to_fli_converter.xml
galaxy/datatypes/converters/gff_to_interval_index_converter.py
galaxy/datatypes/converters/gff_to_interval_index_converter.xml
galaxy/datatypes/converters/gff_to_tabix_converter.xml
galaxy/datatypes/converters/gz_to_uncompressed.xml
galaxy/datatypes/converters/hg17.len
galaxy/datatypes/converters/inchi_to_cml_converter.xml
galaxy/datatypes/converters/inchi_to_mol2_converter.xml
galaxy/datatypes/converters/inchi_to_mol_converter.xml
galaxy/datatypes/converters/inchi_to_sdf_converter.xml
galaxy/datatypes/converters/inchi_to_smi_converter.xml
galaxy/datatypes/converters/interval_to_bed12_converter.xml
galaxy/datatypes/converters/interval_to_bed6_converter.xml
galaxy/datatypes/converters/interval_to_bed_converter.py
galaxy/datatypes/converters/interval_to_bed_converter.xml
galaxy/datatypes/converters/interval_to_bedstrict_converter.py
galaxy/datatypes/converters/interval_to_bedstrict_converter.xml
galaxy/datatypes/converters/interval_to_bgzip_converter.xml
galaxy/datatypes/converters/interval_to_bigwig_converter.xml
galaxy/datatypes/converters/interval_to_fli.py
galaxy/datatypes/converters/interval_to_interval_index_converter.py
galaxy/datatypes/converters/interval_to_interval_index_converter.xml
galaxy/datatypes/converters/interval_to_tabix_converter.py
galaxy/datatypes/converters/interval_to_tabix_converter.xml
galaxy/datatypes/converters/len_to_linecount.xml
galaxy/datatypes/converters/lped_to_fped_converter.py
galaxy/datatypes/converters/lped_to_fped_converter.xml
galaxy/datatypes/converters/lped_to_pbed_converter.py
galaxy/datatypes/converters/lped_to_pbed_converter.xml
galaxy/datatypes/converters/maf_to_fasta_converter.py
galaxy/datatypes/converters/maf_to_fasta_converter.xml
galaxy/datatypes/converters/maf_to_interval_converter.py
galaxy/datatypes/converters/maf_to_interval_converter.xml
galaxy/datatypes/converters/mol2_to_cml_converter.xml
galaxy/datatypes/converters/mol2_to_inchi_converter.xml
galaxy/datatypes/converters/mol2_to_mol_converter.xml
galaxy/datatypes/converters/mol2_to_sdf_converter.xml
galaxy/datatypes/converters/mol2_to_smi_converter.xml
galaxy/datatypes/converters/mol_to_cml_converter.xml
galaxy/datatypes/converters/mol_to_inchi_converter.xml
galaxy/datatypes/converters/mol_to_mol2_converter.xml
galaxy/datatypes/converters/mol_to_smi_converter.xml
galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml
galaxy/datatypes/converters/pbed_ldreduced_converter.py
galaxy/datatypes/converters/pbed_ldreduced_converter.xml
galaxy/datatypes/converters/pbed_to_lped_converter.py
galaxy/datatypes/converters/pbed_to_lped_converter.xml
galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py
galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml
galaxy/datatypes/converters/pileup_to_interval_index_converter.py
galaxy/datatypes/converters/pileup_to_interval_index_converter.xml
galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py
galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml
galaxy/datatypes/converters/sam_to_bigwig_converter.xml
galaxy/datatypes/converters/sam_to_unsorted_bam.xml
galaxy/datatypes/converters/sdf_to_cml_converter.xml
galaxy/datatypes/converters/sdf_to_inchi_converter.xml
galaxy/datatypes/converters/sdf_to_mol2_converter.xml
galaxy/datatypes/converters/sdf_to_smi_converter.xml
galaxy/datatypes/converters/smi_to_cml_converter.xml
galaxy/datatypes/converters/smi_to_inchi_converter.xml
galaxy/datatypes/converters/smi_to_mol2_converter.xml
galaxy/datatypes/converters/smi_to_mol_converter.xml
galaxy/datatypes/converters/smi_to_sdf_converter.xml
galaxy/datatypes/converters/smi_to_smi_converter.xml
galaxy/datatypes/converters/tabular_csv.py
galaxy/datatypes/converters/tabular_to_csv.xml
galaxy/datatypes/converters/tabular_to_dbnsfp.py
galaxy/datatypes/converters/tabular_to_dbnsfp.xml
galaxy/datatypes/converters/tar_to_directory.xml
galaxy/datatypes/converters/to_coordinate_sorted_bam.xml
galaxy/datatypes/converters/to_qname_sorted_bam.xml
galaxy/datatypes/converters/tool_data_table_conf.xml.test
galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml
galaxy/datatypes/converters/vcf_to_bgzip_converter.xml
galaxy/datatypes/converters/vcf_to_interval_index_converter.py
galaxy/datatypes/converters/vcf_to_interval_index_converter.xml
galaxy/datatypes/converters/vcf_to_tabix_converter.xml
galaxy/datatypes/converters/vcf_to_vcf_bgzip.py
galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml
galaxy/datatypes/converters/wig_to_bigwig_converter.xml
galaxy/datatypes/converters/wiggle_to_simple_converter.py
galaxy/datatypes/converters/wiggle_to_simple_converter.xml
galaxy/datatypes/dataproviders/__init__.py
galaxy/datatypes/dataproviders/base.py
galaxy/datatypes/dataproviders/chunk.py
galaxy/datatypes/dataproviders/column.py
galaxy/datatypes/dataproviders/dataset.py
galaxy/datatypes/dataproviders/decorators.py
galaxy/datatypes/dataproviders/exceptions.py
galaxy/datatypes/dataproviders/external.py
galaxy/datatypes/dataproviders/hierarchy.py
galaxy/datatypes/dataproviders/line.py
galaxy/datatypes/display_applications/__init__.py
galaxy/datatypes/display_applications/application.py
galaxy/datatypes/display_applications/parameters.py
galaxy/datatypes/display_applications/util.py
galaxy/datatypes/display_applications/xsd/geda.xsd
galaxy/datatypes/test/0.txt
galaxy/datatypes/test/0_nonewline
galaxy/datatypes/test/1.afg
galaxy/datatypes/test/1.arff
galaxy/datatypes/test/1.bam
galaxy/datatypes/test/1.bcf
galaxy/datatypes/test/1.bcf_uncompressed
galaxy/datatypes/test/1.bed
galaxy/datatypes/test/1.excel.xls
galaxy/datatypes/test/1.excel.xlsx
galaxy/datatypes/test/1.fasta.gz
galaxy/datatypes/test/1.fastq
galaxy/datatypes/test/1.fastqcssanger
galaxy/datatypes/test/1.fastqsanger
galaxy/datatypes/test/1.fastqsanger.bz2
galaxy/datatypes/test/1.fastqsanger.gz
galaxy/datatypes/test/1.fastqsolexa
galaxy/datatypes/test/1.genbank
galaxy/datatypes/test/1.genbank.gz
galaxy/datatypes/test/1.gg
galaxy/datatypes/test/1.hdt
galaxy/datatypes/test/1.json
galaxy/datatypes/test/1.memepsp
galaxy/datatypes/test/1.mtx
galaxy/datatypes/test/1.obo
galaxy/datatypes/test/1.owl
galaxy/datatypes/test/1.phyloxml
galaxy/datatypes/test/1.ptkscmp
galaxy/datatypes/test/1.qname_sorted.bam
galaxy/datatypes/test/1.sam
galaxy/datatypes/test/1.sff
galaxy/datatypes/test/1.smat
galaxy/datatypes/test/1.stockholm
galaxy/datatypes/test/1.tiff
galaxy/datatypes/test/1.ttl
galaxy/datatypes/test/1.vcf
galaxy/datatypes/test/1.vcf_bgzip
galaxy/datatypes/test/1.xmfa
galaxy/datatypes/test/10col.pileup
galaxy/datatypes/test/1imzml
galaxy/datatypes/test/2.cram
galaxy/datatypes/test/2.fastq
galaxy/datatypes/test/2.fastqsolexa
galaxy/datatypes/test/2.mtx
galaxy/datatypes/test/2.shuffled.unsorted.bam
galaxy/datatypes/test/2.tabular
galaxy/datatypes/test/2.txt
galaxy/datatypes/test/3.fastq
galaxy/datatypes/test/3.mtx
galaxy/datatypes/test/3.txt
galaxy/datatypes/test/3unsorted.bam
galaxy/datatypes/test/4.bed
galaxy/datatypes/test/4.fastqsanger
galaxy/datatypes/test/454Score.pdf
galaxy/datatypes/test/5e5z.pdb
galaxy/datatypes/test/5e5z.pqr
galaxy/datatypes/test/6col.pileup
galaxy/datatypes/test/A-3105.paf
galaxy/datatypes/test/Acanium.snaphmm
galaxy/datatypes/test/NuBBE_1_obabel_3D.pdbqt
galaxy/datatypes/test/affy_v_3.cel
galaxy/datatypes/test/affy_v_4.cel
galaxy/datatypes/test/affy_v_agcc.cel
galaxy/datatypes/test/alignment.axt
galaxy/datatypes/test/alignment.lav
galaxy/datatypes/test/big.gfa1
galaxy/datatypes/test/biom2_sparse_otu_table_hdf5.biom2
galaxy/datatypes/test/brukerbaf.d.tar
galaxy/datatypes/test/chebi_57262.v3k.mol
galaxy/datatypes/test/complete.bed
galaxy/datatypes/test/diamond.daa
galaxy/datatypes/test/diamond.rma6
galaxy/datatypes/test/diamond_db.dmnd
galaxy/datatypes/test/dosimzml
galaxy/datatypes/test/drugbank_drugs.cml
galaxy/datatypes/test/drugbank_drugs.inchi
galaxy/datatypes/test/drugbank_drugs.mol2
galaxy/datatypes/test/drugbank_drugs.sdf
galaxy/datatypes/test/drugbank_drugs.smi
galaxy/datatypes/test/empty.txt
galaxy/datatypes/test/example.iqtree
galaxy/datatypes/test/file.html
galaxy/datatypes/test/gff.gff3
galaxy/datatypes/test/gff.gff3.gz
galaxy/datatypes/test/gis.geojson
galaxy/datatypes/test/github88.v3k.sdf
galaxy/datatypes/test/imgt.json
galaxy/datatypes/test/infernal_model.cm
galaxy/datatypes/test/interv1.bed
galaxy/datatypes/test/interval.interval
galaxy/datatypes/test/issue1818.tabular
galaxy/datatypes/test/linkstudies.allegro_fparam
galaxy/datatypes/test/linkstudies.alohomora_gts
galaxy/datatypes/test/linkstudies.linkage_datain
galaxy/datatypes/test/linkstudies.linkage_map
galaxy/datatypes/test/matrix.cool
galaxy/datatypes/test/matrix.mcool
galaxy/datatypes/test/md.cpt
galaxy/datatypes/test/md.edr
galaxy/datatypes/test/md.trr
galaxy/datatypes/test/md.xtc
galaxy/datatypes/test/megablast_xml_parser_test1.blastxml
galaxy/datatypes/test/mothur_datatypetest_false.mothur.axes
galaxy/datatypes/test/mothur_datatypetest_false.mothur.filter
galaxy/datatypes/test/mothur_datatypetest_false.mothur.freq
galaxy/datatypes/test/mothur_datatypetest_false.mothur.lower.dist
galaxy/datatypes/test/mothur_datatypetest_false.mothur.map
galaxy/datatypes/test/mothur_datatypetest_false.mothur.oligos
galaxy/datatypes/test/mothur_datatypetest_false.mothur.otu
galaxy/datatypes/test/mothur_datatypetest_false.mothur.pair.dist
galaxy/datatypes/test/mothur_datatypetest_false.mothur.quan
galaxy/datatypes/test/mothur_datatypetest_false.mothur.ref.taxonomy
galaxy/datatypes/test/mothur_datatypetest_false.mothur.sabund
galaxy/datatypes/test/mothur_datatypetest_false.mothur.shared
galaxy/datatypes/test/mothur_datatypetest_false.mothur.square.dist
galaxy/datatypes/test/mothur_datatypetest_false_2.mothur.freq
galaxy/datatypes/test/mothur_datatypetest_true.mothur.axes
galaxy/datatypes/test/mothur_datatypetest_true.mothur.filter
galaxy/datatypes/test/mothur_datatypetest_true.mothur.freq
galaxy/datatypes/test/mothur_datatypetest_true.mothur.lower.dist
galaxy/datatypes/test/mothur_datatypetest_true.mothur.map
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galaxy/datatypes/test/mothur_datatypetest_true.mothur.quan
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galaxy/datatypes/test/mothur_datatypetest_true.mothur.square.dist
galaxy/datatypes/test/oxli_countgraph.oxlicg
galaxy/datatypes/test/oxli_graphlabels.oxligl
galaxy/datatypes/test/oxli_nodegraph.oxling
galaxy/datatypes/test/oxli_stoptags.oxlist
galaxy/datatypes/test/oxli_subset.oxliss
galaxy/datatypes/test/oxli_tagset.oxlits
galaxy/datatypes/test/pbmc3k_tiny.h5ad
galaxy/datatypes/test/postgresql_fake.tar.bz2
galaxy/datatypes/test/q.fps
galaxy/datatypes/test/sequence.csfasta
galaxy/datatypes/test/sequence.fasta
galaxy/datatypes/test/sequence.fastg
galaxy/datatypes/test/sequence.maf
galaxy/datatypes/test/sequence.qual454
galaxy/datatypes/test/sequence.qualsolid
galaxy/datatypes/test/some.wiff.tar
galaxy/datatypes/test/tblastn_four_human_vs_rhodopsin.blastxml
galaxy/datatypes/test/temp.txt
galaxy/datatypes/test/test.blib
galaxy/datatypes/test/test.dlib
galaxy/datatypes/test/test.dta2d
galaxy/datatypes/test/test.edta
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galaxy/datatypes/test/test.gal
galaxy/datatypes/test/test.gff
galaxy/datatypes/test/test.gpr
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galaxy/datatypes/test/test.idpdb
galaxy/datatypes/test/test.kroenik
galaxy/datatypes/test/test.loom
galaxy/datatypes/test/test.mz5
galaxy/datatypes/test/test.mztab
galaxy/datatypes/test/test.mztab2
galaxy/datatypes/test/test.osw
galaxy/datatypes/test/test.peff
galaxy/datatypes/test/test.peplist
galaxy/datatypes/test/test.phylip
galaxy/datatypes/test/test.pqp
galaxy/datatypes/test/test.psms
galaxy/datatypes/test/test.sqmass
galaxy/datatypes/test/test_charmm.vel
galaxy/datatypes/test/test_ensembl.tabular
galaxy/datatypes/test/test_glucose_vacuum.dcd
galaxy/datatypes/test/test_space.txt
galaxy/datatypes/test/test_tab.bed
galaxy/datatypes/test/test_tab1.tabular
galaxy/datatypes/test/ucsc.customtrack
galaxy/datatypes/test/vcf_gzipped.vcf.gz
galaxy/datatypes/test/wiggle.wig
galaxy/datatypes/util/__init__.py
galaxy/datatypes/util/generic_util.py
galaxy/datatypes/util/gff_util.py
galaxy/datatypes/util/maf_utilities.py
galaxy/model/__init__.py
galaxy/model/base.py
galaxy/model/custom_types.py
galaxy/model/database_heartbeat.py
galaxy/model/item_attrs.py
galaxy/model/mapping.py
galaxy/model/metadata.py
galaxy/model/none_like.py
galaxy/model/search.py
galaxy/model/security.py
galaxy/model/tags.py
galaxy/model/triggers.py
galaxy/model/dataset_collections/__init__.py
galaxy/model/dataset_collections/builder.py
galaxy/model/dataset_collections/matching.py
galaxy/model/dataset_collections/registry.py
galaxy/model/dataset_collections/structure.py
galaxy/model/dataset_collections/subcollections.py
galaxy/model/dataset_collections/type_description.py
galaxy/model/dataset_collections/types/__init__.py
galaxy/model/dataset_collections/types/list.py
galaxy/model/dataset_collections/types/paired.py
galaxy/model/migrate/__init__.py
galaxy/model/migrate/check.py
galaxy/model/migrate/migrate.cfg
galaxy/model/migrate/versions/0001_initial_tables.py
galaxy/model/migrate/versions/0002_metadata_file_table.py
galaxy/model/migrate/versions/0003_security_and_libraries.py
galaxy/model/migrate/versions/0004_indexes_and_defaults.py
galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py
galaxy/model/migrate/versions/0006_change_qual_datatype.py
galaxy/model/migrate/versions/0007_sharing_histories.py
galaxy/model/migrate/versions/0008_galaxy_forms.py
galaxy/model/migrate/versions/0009_request_table.py
galaxy/model/migrate/versions/0010_hda_display_at_authz_table.py
galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py
galaxy/model/migrate/versions/0012_user_address.py
galaxy/model/migrate/versions/0013_change_lib_item_templates_to_forms.py
galaxy/model/migrate/versions/0014_pages.py
galaxy/model/migrate/versions/0015_tagging.py
galaxy/model/migrate/versions/0016_v0015_mysql_index_fix.py
galaxy/model/migrate/versions/0017_library_item_indexes.py
galaxy/model/migrate/versions/0018_ordered_tags_and_page_tags.py
galaxy/model/migrate/versions/0019_request_library_folder.py
galaxy/model/migrate/versions/0020_library_upload_job.py
galaxy/model/migrate/versions/0021_user_prefs.py
galaxy/model/migrate/versions/0022_visualization_tables.py
galaxy/model/migrate/versions/0023_page_published_and_deleted_columns.py
galaxy/model/migrate/versions/0024_page_slug_unique_constraint.py
galaxy/model/migrate/versions/0025_user_info.py
galaxy/model/migrate/versions/0026_cloud_tables.py
galaxy/model/migrate/versions/0027_request_events.py
galaxy/model/migrate/versions/0028_external_metadata_file_override.py
galaxy/model/migrate/versions/0029_user_actions.py
galaxy/model/migrate/versions/0030_history_slug_column.py
galaxy/model/migrate/versions/0031_community_and_workflow_tags.py
galaxy/model/migrate/versions/0032_stored_workflow_slug_column.py
galaxy/model/migrate/versions/0033_published_cols_for_histories_and_workflows.py
galaxy/model/migrate/versions/0034_page_user_share_association.py
galaxy/model/migrate/versions/0035_item_annotations_and_workflow_step_tags.py
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galaxy/model/migrate/versions/0039_add_synopsis_column_to_library_table.py
galaxy/model/migrate/versions/0040_page_annotations.py
galaxy/model/migrate/versions/0041_workflow_invocation.py
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galaxy/model/migrate/versions/0043_visualization_sharing_tagging_annotating.py
galaxy/model/migrate/versions/0044_add_notify_column_to_request_table.py
galaxy/model/migrate/versions/0045_request_type_permissions_table.py
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galaxy/model/migrate/versions/0049_api_keys_table.py
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galaxy/model/migrate/versions/0056_workflow_outputs.py
galaxy/model/migrate/versions/0057_request_notify.py
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galaxy/model/migrate/versions/0059_sample_dataset_file_path.py
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galaxy/model/migrate/versions/0061_tasks.py
galaxy/model/migrate/versions/0062_user_openid_table.py
galaxy/model/migrate/versions/0063_sequencer_table.py
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galaxy/model/migrate/versions/0065_add_name_to_form_fields_and_values.py
galaxy/model/migrate/versions/0066_deferred_job_and_transfer_job_tables.py
galaxy/model/migrate/versions/0067_populate_sequencer_table.py
galaxy/model/migrate/versions/0068_rename_sequencer_to_external_services.py
galaxy/model/migrate/versions/0069_rename_sequencer_form_type.py
galaxy/model/migrate/versions/0070_add_info_column_to_deferred_job_table.py
galaxy/model/migrate/versions/0071_add_history_and_workflow_to_sample.py
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galaxy/model/migrate/versions/0073_add_ldda_to_implicit_conversion_table.py
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galaxy/model/migrate/versions/0075_add_subindex_column_to_run_table.py
galaxy/model/migrate/versions/0076_fix_form_values_data_corruption.py
galaxy/model/migrate/versions/0077_create_tool_tag_association_table.py
galaxy/model/migrate/versions/0078_add_columns_for_disk_usage_accounting.py
galaxy/model/migrate/versions/0079_input_library_to_job_table.py
galaxy/model/migrate/versions/0080_quota_tables.py
galaxy/model/migrate/versions/0081_add_tool_version_to_hda_ldda.py
galaxy/model/migrate/versions/0082_add_tool_shed_repository_table.py
galaxy/model/migrate/versions/0083_add_prepare_files_to_task.py
galaxy/model/migrate/versions/0084_add_ldda_id_to_implicit_conversion_table.py
galaxy/model/migrate/versions/0085_add_task_info.py
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galaxy/model/migrate/versions/0087_tool_id_guid_map_table.py
galaxy/model/migrate/versions/0088_add_installed_changeset_revison_column.py
galaxy/model/migrate/versions/0089_add_object_store_id_columns.py
galaxy/model/migrate/versions/0090_add_tool_shed_repository_table_columns.py
galaxy/model/migrate/versions/0091_add_tool_version_tables.py
galaxy/model/migrate/versions/0092_add_migrate_tools_table.py
galaxy/model/migrate/versions/0093_add_job_params_col.py
galaxy/model/migrate/versions/0094_add_job_handler_col.py
galaxy/model/migrate/versions/0095_hda_subsets.py
galaxy/model/migrate/versions/0096_openid_provider.py
galaxy/model/migrate/versions/0097_add_ctx_rev_column.py
galaxy/model/migrate/versions/0098_genome_index_tool_data_table.py
galaxy/model/migrate/versions/0099_add_tool_dependency_table.py
galaxy/model/migrate/versions/0100_alter_tool_dependency_table_version_column.py
galaxy/model/migrate/versions/0101_drop_installed_changeset_revision_column.py
galaxy/model/migrate/versions/0102_add_tool_dependency_status_columns.py
galaxy/model/migrate/versions/0103_add_tool_shed_repository_status_columns.py
galaxy/model/migrate/versions/0104_update_genome_downloader_job_parameters.py
galaxy/model/migrate/versions/0105_add_cleanup_event_table.py
galaxy/model/migrate/versions/0106_add_missing_indexes.py
galaxy/model/migrate/versions/0107_add_exit_code_to_job_and_task.py
galaxy/model/migrate/versions/0108_add_extended_metadata.py
galaxy/model/migrate/versions/0109_add_repository_dependency_tables.py
galaxy/model/migrate/versions/0110_add_dataset_uuid.py
galaxy/model/migrate/versions/0111_add_job_destinations.py
galaxy/model/migrate/versions/0112_add_data_manager_history_association_and_data_manager_job_association_tables.py
galaxy/model/migrate/versions/0113_update_migrate_tools_table.py
galaxy/model/migrate/versions/0114_update_migrate_tools_table_again.py
galaxy/model/migrate/versions/0115_longer_user_password_field.py
galaxy/model/migrate/versions/0116_drop_update_available_col_add_tool_shed_status_col.py
galaxy/model/migrate/versions/0117_add_user_activation.py
galaxy/model/migrate/versions/0118_add_hda_extended_metadata.py
galaxy/model/migrate/versions/0119_job_metrics.py
galaxy/model/migrate/versions/0120_dataset_collections.py
galaxy/model/migrate/versions/0121_workflow_uuids.py
galaxy/model/migrate/versions/0122_grow_mysql_blobs.py
galaxy/model/migrate/versions/0123_add_workflow_request_tables.py
galaxy/model/migrate/versions/0124_job_state_history.py
galaxy/model/migrate/versions/0125_workflow_step_tracking.py
galaxy/model/migrate/versions/0126_password_reset.py
galaxy/model/migrate/versions/0127_output_collection_adjustments.py
galaxy/model/migrate/versions/0128_session_timeout.py
galaxy/model/migrate/versions/0129_job_external_output_metadata_validity.py
galaxy/model/migrate/versions/0130_change_pref_datatype.py
galaxy/model/migrate/versions/0131_subworkflow_and_input_parameter_modules.py
galaxy/model/migrate/versions/0132_add_lastpasswordchange_to_user.py
galaxy/model/migrate/versions/0133_add_dependency_column_to_job.py
galaxy/model/migrate/versions/0134_hda_set_deleted_if_purged.py
galaxy/model/migrate/versions/0135_add_library_tags.py
galaxy/model/migrate/versions/0136_collection_and_workflow_state.py
galaxy/model/migrate/versions/0137_add_copied_from_job_id_column.py
galaxy/model/migrate/versions/0138_add_hda_version.py
galaxy/model/migrate/versions/0139_add_history_dataset_association_history_table.py
galaxy/model/migrate/versions/0140_add_dataset_version_to_job_to_input_dataset_association_table.py
galaxy/model/migrate/versions/0141_add_oidc_tables.py
galaxy/model/migrate/versions/0142_change_numeric_metric_precision.py
galaxy/model/migrate/versions/0143_add_cloudauthz_tables.py
galaxy/model/migrate/versions/0144_add_cleanup_event_user_table.py
galaxy/model/migrate/versions/0145_add_workflow_step_input.py
galaxy/model/migrate/versions/0146_workflow_paths.py
galaxy/model/migrate/versions/0147_job_messages.py
galaxy/model/migrate/versions/0148_add_checksum_table.py
galaxy/model/migrate/versions/0149_dynamic_tools.py
galaxy/model/migrate/versions/0150_add_create_time_field_for_cloudauthz.py
galaxy/model/migrate/versions/0151_add_worker_process.py
galaxy/model/migrate/versions/0152_add_metadata_file_uuid.py
galaxy/model/migrate/versions/0153_add_custos_authnz_token_table.py
galaxy/model/migrate/versions/0154_created_from_basename.py
galaxy/model/migrate/versions/0155_job_galaxy_version.py
galaxy/model/migrate/versions/0156_add_interactivetools.py
galaxy/model/migrate/versions/0157_rework_dataset_validation.py
galaxy/model/migrate/versions/0158_workflow_reports.py
galaxy/model/migrate/versions/0159_add_job_external_id_index.py
galaxy/model/migrate/versions/0160_hda_set_deleted_if_purged_again.py
galaxy/model/migrate/versions/0161_add_workflow_invocation_output_table.py
galaxy/model/migrate/versions/0162_job_only_pjas.py
galaxy/model/migrate/versions/0163_worker_process_pid.py
galaxy/model/migrate/versions/0164_page_format.py
galaxy/model/migrate/versions/0165_add_content_update_time.py
galaxy/model/migrate/versions/__init__.py
galaxy/model/migrate/versions/util.py
galaxy/model/orm/__init__.py
galaxy/model/orm/engine_factory.py
galaxy/model/orm/logging_connection_proxy.py
galaxy/model/orm/now.py
galaxy/model/orm/scripts.py
galaxy/model/store/__init__.py
galaxy/model/store/build_objects.py
galaxy/model/store/discover.py
galaxy/model/tool_shed_install/__init__.py
galaxy/model/tool_shed_install/mapping.py
galaxy/model/tool_shed_install/migrate/__init__.py
galaxy/model/tool_shed_install/migrate/check.py
galaxy/model/tool_shed_install/migrate/migrate.cfg
galaxy/model/tool_shed_install/migrate/versions/0001_add_tool_shed_repository_table.py
galaxy/model/tool_shed_install/migrate/versions/0002_add_tool_shed_repository_table_columns.py
galaxy/model/tool_shed_install/migrate/versions/0003_tool_id_guid_map_table.py
galaxy/model/tool_shed_install/migrate/versions/0004_add_installed_changeset_revison_column.py
galaxy/model/tool_shed_install/migrate/versions/0005_add_tool_shed_repository_table_columns.py
galaxy/model/tool_shed_install/migrate/versions/0006_add_tool_version_tables.py
galaxy/model/tool_shed_install/migrate/versions/0007_add_migrate_tools_table.py
galaxy/model/tool_shed_install/migrate/versions/0008_add_ctx_rev_column.py
galaxy/model/tool_shed_install/migrate/versions/0009_add_tool_dependency_table.py
galaxy/model/tool_shed_install/migrate/versions/0010_alter_tool_dependency_table_version_column.py
galaxy/model/tool_shed_install/migrate/versions/0011_drop_installed_changeset_revision_column.py
galaxy/model/tool_shed_install/migrate/versions/0012_add_tool_dependency_status_columns.py
galaxy/model/tool_shed_install/migrate/versions/0013_add_tool_shed_repository_status_columns.py
galaxy/model/tool_shed_install/migrate/versions/0014_add_repository_dependency_tables.py
galaxy/model/tool_shed_install/migrate/versions/0015_update_migrate_tools_table.py
galaxy/model/tool_shed_install/migrate/versions/0016_update_migrate_tools_table_again.py
galaxy/model/tool_shed_install/migrate/versions/0017_drop_update_available_col_add_tool_shed_status_col.py
galaxy/quota/__init__.py
galaxy/security/__init__.py
galaxy/security/idencoding.py
galaxy/security/passwords.py
galaxy/security/validate_user_input.py
galaxy_data.egg-info/PKG-INFO
galaxy_data.egg-info/SOURCES.txt
galaxy_data.egg-info/dependency_links.txt
galaxy_data.egg-info/entry_points.txt
galaxy_data.egg-info/not-zip-safe
galaxy_data.egg-info/requires.txt
galaxy_data.egg-info/top_level.txt
scripts/commit_version.py
scripts/new_version.py
scripts/print_version_for_release.py
tests/__init__.py
tests/test_galaxy_mapping.py
tests/datatypes/__init__.py
tests/datatypes/test_bam.py
tests/datatypes/test_bcf.py
tests/datatypes/test_cram.py
tests/datatypes/test_data.py
tests/datatypes/test_datatypes_registry.py
tests/datatypes/test_sniff.py
tests/datatypes/test_validation.py
tests/datatypes/test_vcf.py
tests/datatypes/util.py
tests/datatypes/converters/__init__.py
tests/datatypes/converters/test_interval_to_tabix.py
tests/datatypes/dataproviders/__init__.py
tests/datatypes/dataproviders/test_base_dataproviders.py
tests/datatypes/dataproviders/test_line_dataproviders.py
tests/unittest_utils/__init__.py
tests/unittest_utils/tempfilecache.py
tests/unittest_utils/utility.py