MANIFEST.in
README.md
setup.py
scikick/__init__.py
scikick/config.py
scikick/graph.py
scikick/init.py
scikick/layout.py
scikick/move.py
scikick/scikick.py
scikick/snakemake.py
scikick/status.py
scikick/utils.py
scikick/version.py
scikick/yaml.py
scikick.egg-info/PKG-INFO
scikick.egg-info/SOURCES.txt
scikick.egg-info/dependency_links.txt
scikick.egg-info/entry_points.txt
scikick.egg-info/not-zip-safe
scikick.egg-info/requires.txt
scikick.egg-info/top_level.txt
scikick/demo/PCA.Rmd
scikick/demo/PC_score_statistics.Rmd
scikick/demo/analysis_config.txt
scikick/demo/generate.Rmd
scikick/demo/index.Rmd
scikick/usr/.gitignore
scikick/usr/.gitlab-ci.yml
scikick/usr/README
scikick/usr/requirements.txt
scikick/usr/scikick.yml
scikick/workflow/README.md
scikick/workflow/Snakefile
scikick/workflow/loghandler.py
scikick/workflow/presnakemake.py
scikick/workflow/experimental_rules/README
scikick/workflow/experimental_rules/generate_metadata.py
scikick/workflow/experimental_rules/jupyter_book.smk
scikick/workflow/experimental_rules/manubot.smk
scikick/workflow/experimental_rules/md_only.smk
scikick/workflow/experimental_rules/min_site.smk
scikick/workflow/experimental_rules/pdf.smk
scikick/workflow/experimental_rules/render_with_css.R
scikick/workflow/experimental_rules/rmarkdown.smk
scikick/workflow/notebook_rules/execute_code.R
scikick/workflow/notebook_rules/execute_code.smk
scikick/workflow/notebook_rules/footer.Rmd
scikick/workflow/notebook_rules/index.Rmd
scikick/workflow/notebook_rules/knit_helpers.R
scikick/workflow/site_rules/default_output.yml
scikick/workflow/site_rules/render_minimal.R
scikick/workflow/site_rules/render_site.smk
scikick/workflow/site_rules/render_site_yamlgen.py