Metadata-Version: 2.1
Name: stjudecloud-merge-counts
Version: 1.2.0
Summary: Utility for merging RNA-seq expression counts files from St. Jude Cloud.
Home-page: https://github.com/stjudecloud/merge-counts
License: MIT
Keywords: bioinformatics,genomics,htseq
Author: Clay McLeod
Author-email: Clay.McLeod@STJUDE.org
Requires-Python: >=3.8,<4.0
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: dxpy (>=0.298.1,<0.299.0)
Requires-Dist: hurry.filesize (>=0.9,<0.10)
Requires-Dist: logzero (>=1.5.0,<2.0.0)
Requires-Dist: pandas (>=1.1.0,<2.0.0)
Requires-Dist: requests (<2.24.0)
Requires-Dist: tables (>=3.6.1,<4.0.0)
Requires-Dist: tqdm (>=4.48.2,<5.0.0)
Project-URL: Repository, https://github.com/stjudecloud/merge-counts
Description-Content-Type: text/markdown

<p align="center">
  <h1 align="center">
    merge-counts
  </h1>

  <p align="center">
    <a href="https://actions-badge.atrox.dev/stjudecloud/merge-counts/goto" target="_blank">
      <img alt="Actions: CI Status"
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    <a href="https://pypi.org/project/stjudecloud-merge-counts/" target="_blank">
      <img alt="PyPI"
          src="https://img.shields.io/pypi/v/stjudecloud-merge-counts?color=orange">
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    <a href="https://github.com/stjudecloud/merge-counts/blob/master/LICENSE.md" target="_blank">
    <img alt="License: MIT"
          src="https://img.shields.io/badge/License-MIT-blue.svg" />
    </a>
  </p>


  <p align="center">
    Utility for merging RNA-seq expression counts files from St. Jude Cloud. 
    <br />
    <br />
    <a href="https://github.com/stjudecloud/merge-counts/issues/new?assignees=&labels=&template=feature_request.md&title=Descriptive%20Title&labels=enhancement">Request Feature</a>
    ·
    <a href="https://github.com/stjudecloud/merge-counts/issues/new?assignees=&labels=&template=bug_report.md&title=Descriptive%20Title&labels=bug">Report Bug</a>
    ·
    ⭐ Consider starring the repo! ⭐
    <br />
  </p>
</p>

## 📚 Getting Started

### Installation

You can install `stjudecloud-merge-counts` using the Python Package Index ([PyPI](https://pypi.org/)).

```bash
pip install stjudecloud-merge-counts
```

## 🖥️ Development

If you are interested in contributing to the code, please first review
our [CONTRIBUTING.md][contributing-md] document. 

To bootstrap a development environment, please use the following commands.

```bash
# Clone the repository
git clone git@github.com:stjudecloud/merge-counts.git
cd merge-counts

# Install the project using poetry
poetry install
```

## 🚧️ Tests

merge-counts provides a (currently patchy) set of tests — both unit and end-to-end.

```bash
py.test
```

## 🤝 Contributing

Contributions, issues and feature requests are welcome!<br />Feel free to check [issues page](https://github.com/stjudecloud/merge-counts/issues). You can also take a look at the [contributing guide][contributing-md].

## 📝 License

This project is licensed under the MIT License—see the [LICENSE.md][license-md] file for details.

Copyright © 2020 [St. Jude Cloud Team](https://github.com/stjudecloud).<br />

[contributing-md]: https://github.com/stjudecloud/merge-counts/blob/master/CONTRIBUTING.md
[license-md]: https://github.com/stjudecloud/merge-counts/blob/master/LICENSE.md

