.gitignore
CHANGELOG.md
LICENSE
MAINTAINERS.md
Makefile
Pipfile
Pipfile.lock
README.md
environment.sh
mkdocs.yml
requirements.txt
setup.py
.github/workflows/build-deploy-documentation.yaml
.github/workflows/check-pull-request.yaml
.github/workflows/pypi-publish.yml
csv/README.md
docs/README.md
graphql/README.md
images/16px-External.svg.png
images/200px-External.svg.png
jsonld-context/nmdc.context.jsonld
jsonschema/README.md
jsonschema/nmdc.schema.json
local/README.md
nmdc_schema/README.md
nmdc_schema/__init__.py
nmdc_schema/annotation.yaml
nmdc_schema/basic_slots.yaml
nmdc_schema/core.yaml
nmdc_schema/external_identifiers.yaml
nmdc_schema/gold-to-mixs.sssom.tsv
nmdc_schema/mixs.yaml
nmdc_schema/nmdc.py
nmdc_schema/nmdc.schema.json
nmdc_schema/nmdc.yaml
nmdc_schema/nmdc_data.py
nmdc_schema/nmdc_version.py
nmdc_schema/prov.yaml
nmdc_schema/validate_nmdc_json.py
nmdc_schema/workflow_execution_activity.yaml
nmdc_schema.egg-info/PKG-INFO
nmdc_schema.egg-info/SOURCES.txt
nmdc_schema.egg-info/dependency_links.txt
nmdc_schema.egg-info/entry_points.txt
nmdc_schema.egg-info/requires.txt
nmdc_schema.egg-info/top_level.txt
notebooks/test-schema-view.ipynb
owl/README.md
python/README.md
python/nmdc.py
rdf/README.md
shex/README.md
slides/schema-slides.html
slides/test_schema_uml.png
slides/test_schema_uml.svg
src/docs/Metadata_Documentation_Overview.md
src/docs/NMDC_MIxS_Soil_documentation.md
src/docs/credits.md
src/docs/home.md
src/docs/identifiers.md
src/docs/schema-validation.md
src/docs/images/NMDC_metadata_img1.png
src/docs/images/NMDC_metadata_img2.png
src/docs/images/NMDC_metadata_img3.png
src/docs/images/NMDC_metadata_img4.png
src/docs/images/NMDC_metadata_img5.png
src/docs/images/NMDC_metadata_img6.png
src/schema/annotation.yaml
src/schema/basic_slots.yaml
src/schema/core.yaml
src/schema/external_identifiers.yaml
src/schema/mixs.yaml
src/schema/nmdc.yaml
src/schema/prov.yaml
src/schema/workflow_execution_activity.yaml
src/slides/schema-slides.md
src/slides/images/test_schema_uml.png
src/slides/images/test_schema_uml.svg
sssom/README.md
sssom/biosample_ebs_water_packages_unclassified_taxa_sssom.tsv
sssom/biosample_env_package_normalizastion.tsv
sssom/gold-to-mixs.sssom.tsv
sssom/per_biosample_scoped_ebs_mapping_results.tsv
test/README.md
test/data/MAGs_activity.json
test/data/biosample_test.json
test/data/functional_annotation_set.json
test/data/functional_annotation_set_invalid.json
test/data/gold_project_test.json
test/data/img_mg_annotation_objects.json
test/data/invalid_study_test.json
test/data/mg_assembly_activities_test.json
test/data/mg_assembly_data_objects_test.json
test/data/nmdc_example_database.json
test/data/study_credit_test.json
test/data/study_test.json
test/data/invalid_schemas/README.md
test/data/invalid_schemas/biosample_invalid_range.json
test/data/invalid_schemas/biosample_mismatch_regex.json
test/data/invalid_schemas/biosample_missing_required_field.json
test/data/invalid_schemas/biosample_single_multi_value_mixup.json
test/data/invalid_schemas/biosample_undeclared_slot.json
test/data/invalid_schemas/study_credit_enum_mangle.json
test/scripts/get_json_schema.py
util/README.md
util/nmdc_data.py
util/nmdc_version.py
util/validate_nmdc_json.py
util/discover_local_pattern/README.md
util/discover_local_pattern/discover_kegg_local_pattern.ipynb
util/discover_local_pattern/eggnog_id_pattern_discovery.ipynb
util/discover_local_pattern/id_validation_opportunities.ipynb
util/discover_local_pattern/plot_linkml_imports.ipynb
util/discover_local_pattern/requirements.txt
util/discover_local_pattern/target/README.md