.gitignore
COPYING
MANIFEST.in
PKG-INFO
README.rst
setup.cfg
setup.py
TEToolkit/Common.py
TEToolkit/Constants.py
TEToolkit/EMAlgorithm.py
TEToolkit/GeneFeatures.py
TEToolkit/IntervalTree.py
TEToolkit/Normalization.py
TEToolkit/Prob.py
TEToolkit/TEindex.py
TEToolkit/__init__.py
TEToolkit.egg-info/PKG-INFO
TEToolkit.egg-info/SOURCES.txt
TEToolkit.egg-info/dependency_links.txt
TEToolkit.egg-info/not-zip-safe
TEToolkit.egg-info/requires.txt
TEToolkit.egg-info/top_level.txt
TEToolkit/IO/FeatIO.py
TEToolkit/IO/FeatIO.pyc
TEToolkit/IO/ReadInputs.py
TEToolkit/IO/ReadInputs.pyc
TEToolkit/IO/__init__.py
TEToolkit/IO/__init__.pyc
TEToolkit/ShortRead/ParseBEDFile.py
TEToolkit/ShortRead/ParseBEDFile.pyc
TEToolkit/ShortRead/__init__.py
TEToolkit/ShortRead/__init__.pyc
bin/TEcount
bin/TEtranscripts
doc/TEToolkit_manual.docx