Metadata-Version: 2.1
Name: imctools
Version: 2.1.8
Summary: Tools to handle Fluidigm IMC data
Home-page: https://github.com/BodenmillerGroup/imctools
License: MIT
Keywords: MCD,OME-TIFF,IMC,CellProfiler
Author: Vito Zanotelli
Author-email: vito.zanotelli@uzh.ch
Requires-Python: >=3.7,<4.0
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Dist: imagecodecs
Requires-Dist: packaging
Requires-Dist: pandas
Requires-Dist: typing_extensions (>=3.7.4.3)
Requires-Dist: xmltodict (>=0.12.0)
Requires-Dist: xtiff (>=0.7.4)
Project-URL: Documentation, https://bodenmillergroup.github.io/imctools
Project-URL: Repository, https://github.com/BodenmillerGroup/imctools
Description-Content-Type: text/markdown

# imctools

![PyPI](https://img.shields.io/pypi/v/imctools)
![PyPI - Python Version](https://img.shields.io/pypi/pyversions/imctools)
![PyPI - License](https://img.shields.io/pypi/l/imctools)
![GitHub Workflow Status (branch)](https://img.shields.io/github/workflow/status/BodenmillerGroup/imctools/test-and-deploy/master)

An IMC file conversion tool that aims to convert IMC raw data files (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler TIFF files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc.

Documentation is available at [https://bodenmillergroup.github.io/imctools](https://bodenmillergroup.github.io/imctools)

## Requirements

This package requires Python 3.7 or later.

Using virtual environments is strongly recommended.

## Installation

Install imctools and its dependencies with:

    pip install imctools

## Usage

See [Quickstart](https://bodenmillergroup.github.io/imctools/quickstart.html)

## Authors

Created and maintained by Vito Zanotelli [vito.zanotelli@uzh.ch](mailto:vito.zanotelli@uzh.ch) and Anton Rau [anton.rau@uzh.ch](mailto:anton.rau@uzh.ch)

## Contributing

[Contributing](https://bodenmillergroup.github.io/imctools/CONTRIBUTING.html)

## Changelog

[Changelog](https://bodenmillergroup.github.io/imctools/CHANGELOG.html)

## License

[MIT](https://bodenmillergroup.github.io/imctools/LICENSE.html)

