LICENSE
README.rst
setup.py
pypgx/__init__.py
pypgx/__main__.py
pypgx/version.py
pypgx.egg-info/PKG-INFO
pypgx.egg-info/SOURCES.txt
pypgx.egg-info/dependency_links.txt
pypgx.egg-info/entry_points.txt
pypgx.egg-info/requires.txt
pypgx.egg-info/top_level.txt
pypgx/api/__init__.py
pypgx/api/beagle.22Jul22.46e.jar
pypgx/api/core.py
pypgx/api/genotype.py
pypgx/api/pipeline.py
pypgx/api/plot.py
pypgx/api/utils.py
pypgx/api/data/__init__.py
pypgx/api/data/allele-table.csv
pypgx/api/data/cnv-table.csv
pypgx/api/data/cpic-table.csv
pypgx/api/data/diplotype-table.csv
pypgx/api/data/equation-table.csv
pypgx/api/data/gene-table.csv
pypgx/api/data/phenotype-table.csv
pypgx/api/data/recommendation-table.csv
pypgx/api/data/variant-table.csv
pypgx/cli/__init__.py
pypgx/cli/call_genotypes.py
pypgx/cli/call_phenotypes.py
pypgx/cli/combine_results.py
pypgx/cli/compare_genotypes.py
pypgx/cli/compute_control_statistics.py
pypgx/cli/compute_copy_number.py
pypgx/cli/compute_target_depth.py
pypgx/cli/create_consolidated_vcf.py
pypgx/cli/create_input_vcf.py
pypgx/cli/create_regions_bed.py
pypgx/cli/estimate_phase_beagle.py
pypgx/cli/filter_samples.py
pypgx/cli/import_read_depth.py
pypgx/cli/import_variants.py
pypgx/cli/plot_bam_copy_number.py
pypgx/cli/plot_bam_read_depth.py
pypgx/cli/plot_cn_af.py
pypgx/cli/plot_vcf_allele_fraction.py
pypgx/cli/plot_vcf_read_depth.py
pypgx/cli/predict_alleles.py
pypgx/cli/predict_cnv.py
pypgx/cli/prepare_depth_of_coverage.py
pypgx/cli/print_data.py
pypgx/cli/print_metadata.py
pypgx/cli/run_chip_pipeline.py
pypgx/cli/run_long_read_pipeline.py
pypgx/cli/run_ngs_pipeline.py
pypgx/cli/slice_bam.py
pypgx/cli/test_cnv_caller.py
pypgx/cli/train_cnv_caller.py
pypgx/sdk/__init__.py
pypgx/sdk/utils.py