Metadata-Version: 2.1
Name: scmags
Version: 1.5
Summary: Single Cell Marker Gene Selection Tool For Spatial Trancriptomics
Home-page: https://github.com/doganlab/scmags
Author: Yusuf Baran
Author-email: fusuf.baran@gmail.com
Maintainer: Yusuf Baran
Maintainer-email: fusuf.baran@gmail.com
License: Apache-2.0
Platform: UNKNOWN
Classifier: Natural Language :: English
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE



### scMAGS: Marker Gene Selection From scRNA-seq Data for Spatial Transcriptomics Studies

![plot](./docs/source/scmags_Abstract.png)

-> scmags selects marker genes from scRNA-seq data that are exclusive to each cell type such that, selected marker genes are highly expressed in a specific cell type while lowly expressed in other cell types.

#### Installation

-> scmags can be installed as follows:
```
$ pip install scmags
```

-> You can also install the development version of scmags from master branch of Git repository:

```
$ pip install git+https://github.com/doganlab/scmags
```
-> See [tutorial](https://scmags.readthedocs.io/en/latest/)  for more detailed information.


