CHANGES.txt
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
scipion_em_xmipp.egg-info/PKG-INFO
scipion_em_xmipp.egg-info/SOURCES.txt
scipion_em_xmipp.egg-info/dependency_links.txt
scipion_em_xmipp.egg-info/entry_points.txt
scipion_em_xmipp.egg-info/requires.txt
scipion_em_xmipp.egg-info/top_level.txt
xmipp3/__init__.py
xmipp3/base.py
xmipp3/bibtex.py
xmipp3/constants.py
xmipp3/programs.py
xmipp3/protocols.conf
xmipp3/utils.py
xmipp3/wizards.py
xmipp3/xmipp_logo.png
xmipp3/convert/__init__.py
xmipp3/convert/convert.py
xmipp3/convert/dataimport.py
xmipp3/convert/io_coordinates.py
xmipp3/protocols/__init__.py
xmipp3/protocols/protocol_align_volume.py
xmipp3/protocols/protocol_align_volume_and_particles.py
xmipp3/protocols/protocol_analyze_local_ctf.py
xmipp3/protocols/protocol_angular_alignment_zernike3d.py
xmipp3/protocols/protocol_angular_graph_consistency.py
xmipp3/protocols/protocol_apply_alignment.py
xmipp3/protocols/protocol_apply_deformation_zernike3d.py
xmipp3/protocols/protocol_apply_transformation_matrix.py
xmipp3/protocols/protocol_assignment_tilt_pair.py
xmipp3/protocols/protocol_break_symmetry.py
xmipp3/protocols/protocol_center_particles.py
xmipp3/protocols/protocol_cl2d.py
xmipp3/protocols/protocol_cl2d_align.py
xmipp3/protocols/protocol_classes_2d_mapping.py
xmipp3/protocols/protocol_classification_gpuCorr.py
xmipp3/protocols/protocol_classification_gpuCorr_full.py
xmipp3/protocols/protocol_classification_gpuCorr_semi.py
xmipp3/protocols/protocol_classify_kmeans2d.py
xmipp3/protocols/protocol_compare_angles.py
xmipp3/protocols/protocol_compare_reprojections.py
xmipp3/protocols/protocol_consensus_classes3D.py
xmipp3/protocols/protocol_consensus_local_ctf.py
xmipp3/protocols/protocol_convert_pdb.py
xmipp3/protocols/protocol_core_analysis.py
xmipp3/protocols/protocol_create_gallery.py
xmipp3/protocols/protocol_ctf_consensus.py
xmipp3/protocols/protocol_ctf_correct_wiener2d.py
xmipp3/protocols/protocol_ctf_defocus_group.py
xmipp3/protocols/protocol_ctf_micrographs.py
xmipp3/protocols/protocol_deep_align.py
xmipp3/protocols/protocol_deep_denoising.py
xmipp3/protocols/protocol_deep_hand.py
xmipp3/protocols/protocol_deep_micrograph_screen.py
xmipp3/protocols/protocol_denoise_particles.py
xmipp3/protocols/protocol_eliminate_empty_images.py
xmipp3/protocols/protocol_enrich.py
xmipp3/protocols/protocol_extract_asymmetric_unit.py
xmipp3/protocols/protocol_extract_particles.py
xmipp3/protocols/protocol_extract_particles_movies.py
xmipp3/protocols/protocol_extract_particles_pairs.py
xmipp3/protocols/protocol_generate_reprojections.py
xmipp3/protocols/protocol_helical_parameters.py
xmipp3/protocols/protocol_kerdensom.py
xmipp3/protocols/protocol_kmeans_clustering.py
xmipp3/protocols/protocol_local_ctf.py
xmipp3/protocols/protocol_metaprotocol_create_output.py
xmipp3/protocols/protocol_metaprotocol_create_subset.py
xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py
xmipp3/protocols/protocol_metaprotocol_golden_highres.py
xmipp3/protocols/protocol_ml2d.py
xmipp3/protocols/protocol_mltomo.py
xmipp3/protocols/protocol_movie_average.py
xmipp3/protocols/protocol_movie_correlation.py
xmipp3/protocols/protocol_movie_gain.py
xmipp3/protocols/protocol_movie_max_shift.py
xmipp3/protocols/protocol_movie_opticalflow.py
xmipp3/protocols/protocol_movie_split_frames.py
xmipp3/protocols/protocol_multiple_fscs.py
xmipp3/protocols/protocol_multireference_alignability.py
xmipp3/protocols/protocol_normalize_strain.py
xmipp3/protocols/protocol_particle_boxsize.py
xmipp3/protocols/protocol_particle_pick.py
xmipp3/protocols/protocol_particle_pick_automatic.py
xmipp3/protocols/protocol_particle_pick_consensus.py
xmipp3/protocols/protocol_particle_pick_pairs.py
xmipp3/protocols/protocol_particle_pick_remove_duplicates.py
xmipp3/protocols/protocol_pdb_deform_zernike3d.py
xmipp3/protocols/protocol_phantom_create.py
xmipp3/protocols/protocol_pick_noise.py
xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py
xmipp3/protocols/protocol_preprocess_micrographs.py
xmipp3/protocols/protocol_random_conical_tilt.py
xmipp3/protocols/protocol_ransac.py
xmipp3/protocols/protocol_reconstruct_fourier.py
xmipp3/protocols/protocol_reconstruct_heterogeneous.py
xmipp3/protocols/protocol_reconstruct_highres.py
xmipp3/protocols/protocol_reconstruct_significant.py
xmipp3/protocols/protocol_reconstruct_swarm.py
xmipp3/protocols/protocol_resolution3d.py
xmipp3/protocols/protocol_resolution_bfactor.py
xmipp3/protocols/protocol_resolution_deepres.py
xmipp3/protocols/protocol_resolution_directional.py
xmipp3/protocols/protocol_resolution_fso.py
xmipp3/protocols/protocol_resolution_monogenic_signal.py
xmipp3/protocols/protocol_rotate_volume.py
xmipp3/protocols/protocol_rotational_spectra.py
xmipp3/protocols/protocol_rotational_symmetry.py
xmipp3/protocols/protocol_screen_deepConsensus.py
xmipp3/protocols/protocol_screen_deeplearning.py
xmipp3/protocols/protocol_screen_particles.py
xmipp3/protocols/protocol_shift_particles.py
xmipp3/protocols/protocol_shift_volume.py
xmipp3/protocols/protocol_simulate_ctf.py
xmipp3/protocols/protocol_solid_angles.py
xmipp3/protocols/protocol_split_volume.py
xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py
xmipp3/protocols/protocol_structure_map.py
xmipp3/protocols/protocol_structure_map_zernike3d.py
xmipp3/protocols/protocol_subtract_projection.py
xmipp3/protocols/protocol_trigger_data.py
xmipp3/protocols/protocol_validate_fscq.py
xmipp3/protocols/protocol_validate_nontilt.py
xmipp3/protocols/protocol_validate_overfitting.py
xmipp3/protocols/protocol_volume_adjust_sub.py
xmipp3/protocols/protocol_volume_consensus.py
xmipp3/protocols/protocol_volume_deform_zernike3d.py
xmipp3/protocols/protocol_volume_local_sharpening.py
xmipp3/protocols/protocol_volume_strain.py
xmipp3/protocols/protocol_write_testC.py
xmipp3/protocols/protocol_write_testP.py
xmipp3/protocols/protocol_preprocess/__init__.py
xmipp3/protocols/protocol_preprocess/geometrical_mask.py
xmipp3/protocols/protocol_preprocess/protocol_add_noise.py
xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py
xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py
xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py
xmipp3/protocols/protocol_preprocess/protocol_filter.py
xmipp3/protocols/protocol_preprocess/protocol_image_operate.py
xmipp3/protocols/protocol_preprocess/protocol_mask.py
xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py
xmipp3/protocols/protocol_preprocess/protocol_preprocess.py
xmipp3/protocols/protocol_preprocess/protocol_process.py
xmipp3/protocols/protocol_projmatch/__init__.py
xmipp3/protocols/protocol_projmatch/projmatch_form.py
xmipp3/protocols/protocol_projmatch/projmatch_initialize.py
xmipp3/protocols/protocol_projmatch/projmatch_steps.py
xmipp3/protocols/protocol_projmatch/protocol_projmatch.py
xmipp3/tests/__init__.py
xmipp3/tests/test_convert_xmipp.py
xmipp3/tests/test_protocol_angular_graph_consistency.py
xmipp3/tests/test_protocol_apply_transformation_matrix.py
xmipp3/tests/test_protocol_compare_angles.py
xmipp3/tests/test_protocol_consensus_classes3D.py
xmipp3/tests/test_protocol_ctf_consensus.py
xmipp3/tests/test_protocol_deep_denoising.py
xmipp3/tests/test_protocol_extract_asymmetric_unit.py
xmipp3/tests/test_protocol_monodir.py
xmipp3/tests/test_protocol_multiple_fsc.py
xmipp3/tests/test_protocol_multireference_alignability.py
xmipp3/tests/test_protocol_reconstruct_fourier.py
xmipp3/tests/test_protocol_screen_deepConsensus.py
xmipp3/tests/test_protocol_simulate_ctf.py
xmipp3/tests/test_protocol_validate_fscq.py
xmipp3/tests/test_protocol_validate_overfitting.py
xmipp3/tests/test_protocols_add_noise.py
xmipp3/tests/test_protocols_continuousflex.py
xmipp3/tests/test_protocols_deepVolPostprocessing.py
xmipp3/tests/test_protocols_deepres.py
xmipp3/tests/test_protocols_fso.py
xmipp3/tests/test_protocols_gpuCorr_classifier.py
xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py
xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py
xmipp3/tests/test_protocols_highres.py
xmipp3/tests/test_protocols_local_defocus.py
xmipp3/tests/test_protocols_localdeblur.py
xmipp3/tests/test_protocols_metaprotocol_golden_highres.py
xmipp3/tests/test_protocols_metaprotocol_heterogeneity.py
xmipp3/tests/test_protocols_mixed_movies.py
xmipp3/tests/test_protocols_monores.py
xmipp3/tests/test_protocols_realignment_classes.py
xmipp3/tests/test_protocols_solid_angles.py
xmipp3/tests/test_protocols_xmipp_2d.py
xmipp3/tests/test_protocols_xmipp_3d.py
xmipp3/tests/test_protocols_xmipp_mics.py
xmipp3/tests/test_protocols_xmipp_movie_resize.py
xmipp3/tests/test_protocols_xmipp_movies.py
xmipp3/tests/test_protocols_zernike3d.py
xmipp3/viewers/__init__.py
xmipp3/viewers/plotter.py
xmipp3/viewers/viewer.py
xmipp3/viewers/viewer_analyze_local_ctf.py
xmipp3/viewers/viewer_angular_alignment_sph.py
xmipp3/viewers/viewer_cl2d.py
xmipp3/viewers/viewer_classes3D.py
xmipp3/viewers/viewer_consensus_classes3D.py
xmipp3/viewers/viewer_ctf_consensus.py
xmipp3/viewers/viewer_deepEMHancer.py
xmipp3/viewers/viewer_deep_align.py
xmipp3/viewers/viewer_deep_consensus.py
xmipp3/viewers/viewer_deep_micrograph_cleaner.py
xmipp3/viewers/viewer_eliminate_empty_images.py
xmipp3/viewers/viewer_extract_asymmetric_unit.py
xmipp3/viewers/viewer_local_sharpening.py
xmipp3/viewers/viewer_metaprotocol_golden_highres.py
xmipp3/viewers/viewer_ml2d.py
xmipp3/viewers/viewer_mltomo.py
xmipp3/viewers/viewer_movie_alignment.py
xmipp3/viewers/viewer_normalize_strain.py
xmipp3/viewers/viewer_pdb_deform_zernike3d.py
xmipp3/viewers/viewer_projmatch.py
xmipp3/viewers/viewer_ransac.py
xmipp3/viewers/viewer_reconstruct_highres.py
xmipp3/viewers/viewer_resolution3d.py
xmipp3/viewers/viewer_resolution_bfactor.py
xmipp3/viewers/viewer_resolution_deepres.py
xmipp3/viewers/viewer_resolution_directional.py
xmipp3/viewers/viewer_resolution_fso.py
xmipp3/viewers/viewer_resolution_monogenic_signal.py
xmipp3/viewers/viewer_solid_angles.py
xmipp3/viewers/viewer_split_volume.py
xmipp3/viewers/viewer_structure_map.py
xmipp3/viewers/viewer_swarm.py
xmipp3/viewers/viewer_validate_fscq.py
xmipp3/viewers/viewer_validate_nontilt.py
xmipp3/viewers/viewer_validate_overfitting.py
xmipp3/viewers/viewer_volume_consensus.py
xmipp3/viewers/viewer_volume_deform_zernike3d.py
xmipp3/viewers/viewer_volume_strain.py
xmipp3/viewers/viewer_volume_subtraction.py