LICENSE
README.md
pyproject.toml
requirements.txt
docs/buildenv/bin/rst2html.py
docs/buildenv/bin/rst2html4.py
docs/buildenv/bin/rst2html5.py
docs/buildenv/bin/rst2latex.py
docs/buildenv/bin/rst2man.py
docs/buildenv/bin/rst2odt.py
docs/buildenv/bin/rst2odt_prepstyles.py
docs/buildenv/bin/rst2pseudoxml.py
docs/buildenv/bin/rst2s5.py
docs/buildenv/bin/rst2xetex.py
docs/buildenv/bin/rst2xml.py
docs/buildenv/bin/rstpep2html.py
docs/source/conf.py
tests/centroidspng2csv_test.py
tests/conf_matrix_sum_test.py
tests/cpairs_test.py
tests/example_test.py
tests/generate_centroids.py
tests/generate_rswoosh.py
tests/get_conn_comp_test.py
tests/graph2centroids_test.py
tests/graph_idx_test.py
tests/hov_prob_pipe_test.py
tests/hov_prob_test.py
tests/hovernet_patches_test.py
tests/metrics_pairs_test.py
tests/metrics_test.py
tests/png2graph_test.py
tests/pngcsv2geojson_test.py
tests/pngcsv2graph_test.py
tests/read_nodes_test.py
tests/remove_idx_test.py
tests/rswoosh_test.py
tumourkit/__init__.py
tumourkit/eval_pipe.py
tumourkit/infer_pipe.py
tumourkit/make_dirs.py
tumourkit/research_pipe.py
tumourkit/train_pipe.py
tumourkit.egg-info/PKG-INFO
tumourkit.egg-info/SOURCES.txt
tumourkit.egg-info/dependency_links.txt
tumourkit.egg-info/entry_points.txt
tumourkit.egg-info/requires.txt
tumourkit.egg-info/top_level.txt
tumourkit/classification/__init__.py
tumourkit/classification/compute_imbalance.py
tumourkit/classification/evaluate.py
tumourkit/classification/infer.py
tumourkit/classification/read_graph.py
tumourkit/classification/train_graphs.py
tumourkit/classification/train_xgboost.py
tumourkit/classification/models/__init__.py
tumourkit/classification/models/gat.py
tumourkit/classification/models/gcn.py
tumourkit/classification/models/hgao.py
tumourkit/classification/models/norm.py
tumourkit/demo/app.py
tumourkit/postprocessing/__init__.py
tumourkit/postprocessing/draw_cells.py
tumourkit/postprocessing/draw_graph.py
tumourkit/postprocessing/join_graph_gt.py
tumourkit/postprocessing/join_hovprob_graph.py
tumourkit/postprocessing/merge_cells.py
tumourkit/postprocessing/rswoosh.py
tumourkit/preprocessing/__init__.py
tumourkit/preprocessing/centroids2png.py
tumourkit/preprocessing/centroidspng2csv.py
tumourkit/preprocessing/geojson2pngcsv.py
tumourkit/preprocessing/graph2centroids.py
tumourkit/preprocessing/hovernet2centroids.py
tumourkit/preprocessing/hovernet2geojson.py
tumourkit/preprocessing/png2graph.py
tumourkit/preprocessing/pngcsv2centroids.py
tumourkit/preprocessing/pngcsv2geojson.py
tumourkit/preprocessing/pngcsv2graph.py
tumourkit/preprocessing/remove_uncertain.py
tumourkit/profiling/cpairs_profile.py
tumourkit/profiling/rswoosh_profile.py
tumourkit/segmentation/__init__.py
tumourkit/segmentation/evaluate.py
tumourkit/segmentation/hovernet/__init__.py
tumourkit/segmentation/hovernet/config.py
tumourkit/segmentation/hovernet/extract_patches.py
tumourkit/segmentation/hovernet/run_infer.py
tumourkit/segmentation/hovernet/train.py
tumourkit/segmentation/hovernet/dataloader/__init__.py
tumourkit/segmentation/hovernet/dataloader/augs.py
tumourkit/segmentation/hovernet/dataloader/infer_loader.py
tumourkit/segmentation/hovernet/dataloader/train_loader.py
tumourkit/segmentation/hovernet/infer/__init__.py
tumourkit/segmentation/hovernet/infer/base.py
tumourkit/segmentation/hovernet/infer/tile.py
tumourkit/segmentation/hovernet/infer/wsi.py
tumourkit/segmentation/hovernet/metrics/__init__.py
tumourkit/segmentation/hovernet/metrics/stats_utils.py
tumourkit/segmentation/hovernet/misc/__init__.py
tumourkit/segmentation/hovernet/misc/patch_extractor.py
tumourkit/segmentation/hovernet/misc/utils.py
tumourkit/segmentation/hovernet/misc/viz_utils.py
tumourkit/segmentation/hovernet/misc/wsi_handler.py
tumourkit/segmentation/hovernet/models/__init__.py
tumourkit/segmentation/hovernet/models/hovernet/__init__.py
tumourkit/segmentation/hovernet/models/hovernet/net_desc.py
tumourkit/segmentation/hovernet/models/hovernet/net_utils.py
tumourkit/segmentation/hovernet/models/hovernet/opt.py
tumourkit/segmentation/hovernet/models/hovernet/post_proc.py
tumourkit/segmentation/hovernet/models/hovernet/run_desc.py
tumourkit/segmentation/hovernet/models/hovernet/targets.py
tumourkit/segmentation/hovernet/models/hovernet/utils.py
tumourkit/segmentation/hovernet/run_utils/__init__.py
tumourkit/segmentation/hovernet/run_utils/engine.py
tumourkit/segmentation/hovernet/run_utils/utils.py
tumourkit/segmentation/hovernet/run_utils/callbacks/__init__.py
tumourkit/segmentation/hovernet/run_utils/callbacks/base.py
tumourkit/segmentation/hovernet/run_utils/callbacks/logging.py
tumourkit/segmentation/hovernet/run_utils/callbacks/serialize.py
tumourkit/utils/__init__.py
tumourkit/utils/calibration_error.py
tumourkit/utils/classification.py
tumourkit/utils/folder2txt.py
tumourkit/utils/nearest.py
tumourkit/utils/pipes.py
tumourkit/utils/postprocessing.py
tumourkit/utils/preprocessing.py
tumourkit/utils/read_nodes.py