CHANGES.txt
LICENSE.txt
MANIFEST.in
README.md
README.rst
requirements.txt
setup.py
bin/alignmentSieve
bin/bamCompare
bin/bamCoverage
bin/bamPEFragmentSize
bin/bigwigCompare
bin/computeGCBias
bin/computeMatrix
bin/computeMatrixOperations
bin/correctGCBias
bin/deeptools
bin/estimateReadFiltering
bin/estimateScaleFactor
bin/multiBamSummary
bin/multiBigwigSummary
bin/plotCorrelation
bin/plotCoverage
bin/plotEnrichment
bin/plotFingerprint
bin/plotHeatmap
bin/plotPCA
bin/plotProfile
deeptools/SES_scaleFactor.py
deeptools/__init__.py
deeptools/_version.py
deeptools/alignmentSieve.py
deeptools/bamCompare.py
deeptools/bamCoverage.py
deeptools/bamHandler.py
deeptools/bamPEFragmentSize.py
deeptools/bigwigCompare.py
deeptools/cm.py
deeptools/computeGCBias.py
deeptools/computeMatrix.py
deeptools/computeMatrixOperations.py
deeptools/correctGCBias.py
deeptools/correlation.py
deeptools/correlation_heatmap.py
deeptools/countReadsPerBin.py
deeptools/deepBlue.py
deeptools/deeptools_list_tools.py
deeptools/estimateReadFiltering.py
deeptools/getFragmentAndReadSize.py
deeptools/getRatio.py
deeptools/getScaleFactor.py
deeptools/getScorePerBigWigBin.py
deeptools/heatmapper.py
deeptools/heatmapper_utilities.py
deeptools/mapReduce.py
deeptools/misc.py
deeptools/multiBamSummary.py
deeptools/multiBigwigSummary.py
deeptools/parserCommon.py
deeptools/plotCorrelation.py
deeptools/plotCoverage.py
deeptools/plotEnrichment.py
deeptools/plotFingerprint.py
deeptools/plotHeatmap.py
deeptools/plotPCA.py
deeptools/plotProfile.py
deeptools/sumCoveragePerBin.py
deeptools/utilities.py
deeptools/writeBedGraph.py
deeptools/writeBedGraph_bam_and_bw.py
scripts/convertChromsBigWig.py
scripts/mappabilityBigWig_to_unmappableBed.sh
scripts/split_bed_into_multiple_files.py