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LICENSE
MANIFEST.in
Makefile
README.md
dev-requirements.txt
requirements.txt
setup.cfg
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docs/Makefile
docs/conf.py
docs/getting_started.rst
docs/index.rst
docs/make.bat
docs/nasc_seq.rst
docs/pipeline_usage.rst
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docs/requirements.txt
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dynast/__init__.py
dynast/align.py
dynast/config.py
dynast/constants.py
dynast/count.py
dynast/estimate.py
dynast/logging.py
dynast/main.py
dynast/ref.py
dynast/stats.py
dynast/technology.py
dynast/utils.py
dynast/benchmarking/__init__.py
dynast/benchmarking/simulation.py
dynast/bins/darwin/STAR/LICENSE
dynast/bins/darwin/STAR/STAR
dynast/bins/linux/STAR/LICENSE
dynast/bins/linux/STAR/STAR
dynast/estimation/__init__.py
dynast/estimation/p_c.py
dynast/estimation/p_e.py
dynast/estimation/pi.py
dynast/models/pi.stan
dynast/preprocessing/__init__.py
dynast/preprocessing/aggregation.py
dynast/preprocessing/bam.py
dynast/preprocessing/conversion.py
dynast/preprocessing/coverage.py
dynast/preprocessing/snp.py
dynast/whitelists/10xv2.txt.gz
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dynast_release.egg-info/PKG-INFO
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tests/__init__.py
tests/mixins.py
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