README.rst
setup.py
pypgx/__init__.py
pypgx/__main__.py
pypgx/version.py
pypgx.egg-info/PKG-INFO
pypgx.egg-info/SOURCES.txt
pypgx.egg-info/dependency_links.txt
pypgx.egg-info/entry_points.txt
pypgx.egg-info/requires.txt
pypgx.egg-info/top_level.txt
pypgx/api/__init__.py
pypgx/api/beagle.28Jun21.220.jar
pypgx/api/core.py
pypgx/api/genotype.py
pypgx/api/pipeline.py
pypgx/api/plot.py
pypgx/api/utils.py
pypgx/api/1kgp/GRCh37/ABCB1.vcf.gz
pypgx/api/1kgp/GRCh37/CACNA1S.vcf.gz
pypgx/api/1kgp/GRCh37/CFTR.vcf.gz
pypgx/api/1kgp/GRCh37/CYP17A1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP19A1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP1A1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP1A2.vcf.gz
pypgx/api/1kgp/GRCh37/CYP1B1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP26A1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2A13.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2A6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2B6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C19.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C8.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C9.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2D6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2E1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2F1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2J2.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2R1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2S1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2W1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A4.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A43.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A5.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A7.vcf.gz
pypgx/api/1kgp/GRCh37/CYP4A11.vcf.gz
pypgx/api/1kgp/GRCh37/CYP4A22.vcf.gz
pypgx/api/1kgp/GRCh37/CYP4B1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP4F2.vcf.gz
pypgx/api/1kgp/GRCh37/DPYD.vcf.gz
pypgx/api/1kgp/GRCh37/F5.vcf.gz
pypgx/api/1kgp/GRCh37/G6PD.vcf.gz
pypgx/api/1kgp/GRCh37/GSTM1.vcf.gz
pypgx/api/1kgp/GRCh37/GSTP1.vcf.gz
pypgx/api/1kgp/GRCh37/GSTT1.vcf.gz
pypgx/api/1kgp/GRCh37/IFNL3.vcf.gz
pypgx/api/1kgp/GRCh37/NAT1.vcf.gz
pypgx/api/1kgp/GRCh37/NAT2.vcf.gz
pypgx/api/1kgp/GRCh37/NUDT15.vcf.gz
pypgx/api/1kgp/GRCh37/POR.vcf.gz
pypgx/api/1kgp/GRCh37/PTGIS.vcf.gz
pypgx/api/1kgp/GRCh37/RYR1.vcf.gz
pypgx/api/1kgp/GRCh37/SLC15A2.vcf.gz
pypgx/api/1kgp/GRCh37/SLC22A2.vcf.gz
pypgx/api/1kgp/GRCh37/SLCO1B1.vcf.gz
pypgx/api/1kgp/GRCh37/SLCO1B3.vcf.gz
pypgx/api/1kgp/GRCh37/SLCO2B1.vcf.gz
pypgx/api/1kgp/GRCh37/SULT1A1.vcf.gz
pypgx/api/1kgp/GRCh37/TBXAS1.vcf.gz
pypgx/api/1kgp/GRCh37/TPMT.vcf.gz
pypgx/api/1kgp/GRCh37/UGT1A1.vcf.gz
pypgx/api/1kgp/GRCh37/UGT1A4.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B15.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B17.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B7.vcf.gz
pypgx/api/1kgp/GRCh37/VKORC1.vcf.gz
pypgx/api/1kgp/GRCh37/XPC.vcf.gz
pypgx/api/1kgp/GRCh38/ABCB1.vcf.gz
pypgx/api/1kgp/GRCh38/CACNA1S.vcf.gz
pypgx/api/1kgp/GRCh38/CFTR.vcf.gz
pypgx/api/1kgp/GRCh38/CYP17A1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP19A1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP1A1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP1A2.vcf.gz
pypgx/api/1kgp/GRCh38/CYP1B1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP26A1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2A13.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2A6.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2B6.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2C19.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2C8.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2C9.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2D6.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2E1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2F1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2J2.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2R1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2S1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP2W1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP3A4.vcf.gz
pypgx/api/1kgp/GRCh38/CYP3A43.vcf.gz
pypgx/api/1kgp/GRCh38/CYP3A5.vcf.gz
pypgx/api/1kgp/GRCh38/CYP3A7.vcf.gz
pypgx/api/1kgp/GRCh38/CYP4A11.vcf.gz
pypgx/api/1kgp/GRCh38/CYP4A22.vcf.gz
pypgx/api/1kgp/GRCh38/CYP4B1.vcf.gz
pypgx/api/1kgp/GRCh38/CYP4F2.vcf.gz
pypgx/api/1kgp/GRCh38/DPYD.vcf.gz
pypgx/api/1kgp/GRCh38/F5.vcf.gz
pypgx/api/1kgp/GRCh38/G6PD.vcf.gz
pypgx/api/1kgp/GRCh38/GSTM1.vcf.gz
pypgx/api/1kgp/GRCh38/GSTP1.vcf.gz
pypgx/api/1kgp/GRCh38/IFNL3.vcf.gz
pypgx/api/1kgp/GRCh38/NAT1.vcf.gz
pypgx/api/1kgp/GRCh38/NAT2.vcf.gz
pypgx/api/1kgp/GRCh38/NUDT15.vcf.gz
pypgx/api/1kgp/GRCh38/POR.vcf.gz
pypgx/api/1kgp/GRCh38/PTGIS.vcf.gz
pypgx/api/1kgp/GRCh38/RYR1.vcf.gz
pypgx/api/1kgp/GRCh38/SLC15A2.vcf.gz
pypgx/api/1kgp/GRCh38/SLC22A2.vcf.gz
pypgx/api/1kgp/GRCh38/SLCO1B1.vcf.gz
pypgx/api/1kgp/GRCh38/SLCO1B3.vcf.gz
pypgx/api/1kgp/GRCh38/SLCO2B1.vcf.gz
pypgx/api/1kgp/GRCh38/SULT1A1.vcf.gz
pypgx/api/1kgp/GRCh38/TBXAS1.vcf.gz
pypgx/api/1kgp/GRCh38/TPMT.vcf.gz
pypgx/api/1kgp/GRCh38/UGT1A1.vcf.gz
pypgx/api/1kgp/GRCh38/UGT1A4.vcf.gz
pypgx/api/1kgp/GRCh38/UGT2B15.vcf.gz
pypgx/api/1kgp/GRCh38/UGT2B7.vcf.gz
pypgx/api/1kgp/GRCh38/VKORC1.vcf.gz
pypgx/api/1kgp/GRCh38/XPC.vcf.gz
pypgx/api/cnv/GRCh37/CYP2A6.zip
pypgx/api/cnv/GRCh37/CYP2B6.zip
pypgx/api/cnv/GRCh37/CYP2D6.zip
pypgx/api/cnv/GRCh37/CYP2E1.zip
pypgx/api/cnv/GRCh37/GSTM1.zip
pypgx/api/cnv/GRCh37/GSTT1.zip
pypgx/api/cnv/GRCh37/SLC22A2.zip
pypgx/api/cnv/GRCh37/UGT1A4.zip
pypgx/api/cnv/GRCh37/UGT2B15.zip
pypgx/api/cnv/GRCh37/UGT2B17.zip
pypgx/api/cnv/GRCh38/CYP2A6.zip
pypgx/api/cnv/GRCh38/CYP2B6.zip
pypgx/api/cnv/GRCh38/CYP2D6.zip
pypgx/api/cnv/GRCh38/CYP2E1.zip
pypgx/api/cnv/GRCh38/GSTM1.zip
pypgx/api/cnv/GRCh38/GSTT1.zip
pypgx/api/cnv/GRCh38/SLC22A2.zip
pypgx/api/cnv/GRCh38/UGT1A4.zip
pypgx/api/cnv/GRCh38/UGT2B15.zip
pypgx/api/cnv/GRCh38/UGT2B17.zip
pypgx/api/data/__init__.py
pypgx/api/data/allele-table.csv
pypgx/api/data/cnv-table.csv
pypgx/api/data/diplotype-table.csv
pypgx/api/data/equation-table.csv
pypgx/api/data/gene-table.csv
pypgx/api/data/phenotype-table.csv
pypgx/api/data/variant-table.csv
pypgx/cli/__init__.py
pypgx/cli/call_genotypes.py
pypgx/cli/call_phenotypes.py
pypgx/cli/combine_results.py
pypgx/cli/compare_genotypes.py
pypgx/cli/compute_control_statistics.py
pypgx/cli/compute_copy_number.py
pypgx/cli/compute_target_depth.py
pypgx/cli/create_consolidated_vcf.py
pypgx/cli/create_regions_bed.py
pypgx/cli/estimate_phase_beagle.py
pypgx/cli/filter_samples.py
pypgx/cli/import_read_depth.py
pypgx/cli/import_variants.py
pypgx/cli/plot_bam_copy_number.py
pypgx/cli/plot_bam_read_depth.py
pypgx/cli/plot_cn_af.py
pypgx/cli/plot_vcf_allele_fraction.py
pypgx/cli/plot_vcf_read_depth.py
pypgx/cli/predict_alleles.py
pypgx/cli/predict_cnv.py
pypgx/cli/prepare_depth_of_coverage.py
pypgx/cli/print_metadata.py
pypgx/cli/run_chip_pipeline.py
pypgx/cli/run_ngs_pipeline.py
pypgx/cli/test_cnv_caller.py
pypgx/cli/train_cnv_caller.py
pypgx/sdk/__init__.py
pypgx/sdk/utils.py