README.md
VERSION
get_gene_length.py
setup.py
./NOISeq.py
./RNAseqpip.py
./__init__.py
./_version.py
./cptDE.py
./cufflinks.py
./expression_filter.py
./func.py
./get_gene_length.py
./get_geneids.py
./gtf_cuff_table.py
./hisat.py
./htseq.py
./progsuit.py
./run_RNAseqpipe.py
./seq2exp.py
./stringtie.py
./verse.py
./expression/__init__.py
./expression/count_merge.py
./expression/normalize.py
./expression/salmon_quantify.py
./funcAnnot/__init__.py
./funcAnnot/annot_from_db.py
./funcAnnot/find_genes_in_genome.py
./funcAnnot/subset_fasta.py
./funcAnnot/b2gprog/GOannot.py
./funcAnnot/b2gprog/__init__.py
./funcAnnot/kegg/KOannot.py
./funcAnnot/kegg/__init__.py
./funcAnnot/kegg/annot2go_stat.py
./funcAnnot/kegg/kaas_online.py
./funcAnnot/kegg/kegg_annot2mapper.py
./funcAnnot/kegg/koenrich/__init__.py
./funcAnnot/kegg/koenrich/keggCountal.py
./funcAnnot/kegg/koenrich/keggenrich.py
./test/__init__.py
./test/function_for_test.py
./test/test_FuncAnnot.py
./test/test_Pipe.py
RNAseqpipe.egg-info/PKG-INFO
RNAseqpipe.egg-info/SOURCES.txt
RNAseqpipe.egg-info/dependency_links.txt
RNAseqpipe.egg-info/requires.txt
RNAseqpipe.egg-info/top_level.txt
confs/RNApip_lnc.conf
confs/base.conf
confs/fr_firststrand.conf
confs/fr_secondstrand.conf
confs/gc.conf
confs/gc_no_gff.conf
confs/hisat_cuff_verse.conf
confs/hisat_htseq_count.conf
confs/hisat_stringtie_verse.conf
confs/hisat_verse_count.conf
confs/hs38.conf
confs/mRNA.conf
confs/mm38.conf
confs/test_gc.conf
confs/test_gc_no_gff.conf
confs/unstrand.conf
confs/zf.conf
confs/zf11.conf
expression/count_merge.py
test/test_FuncAnnot.py
test/test_Pipe.py