LICENSE
README.md
pyproject.toml
mgnify_pipelines_toolkit/__init__.py
mgnify_pipelines_toolkit.egg-info/PKG-INFO
mgnify_pipelines_toolkit.egg-info/SOURCES.txt
mgnify_pipelines_toolkit.egg-info/dependency_links.txt
mgnify_pipelines_toolkit.egg-info/entry_points.txt
mgnify_pipelines_toolkit.egg-info/requires.txt
mgnify_pipelines_toolkit.egg-info/top_level.txt
mgnify_pipelines_toolkit/analysis/__init__.py
mgnify_pipelines_toolkit/analysis/amplicon/amplicon_utils.py
mgnify_pipelines_toolkit/analysis/amplicon/are_there_primers.py
mgnify_pipelines_toolkit/analysis/amplicon/assess_inflection_point_mcp.py
mgnify_pipelines_toolkit/analysis/amplicon/assess_mcp_proportions.py
mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py
mgnify_pipelines_toolkit/analysis/amplicon/find_mcp_inflection_points.py
mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py
mgnify_pipelines_toolkit/analysis/amplicon/mapseq_to_asv_table.py
mgnify_pipelines_toolkit/analysis/amplicon/primer_val_classification.py
mgnify_pipelines_toolkit/analysis/amplicon/remove_ambiguous_reads.py
mgnify_pipelines_toolkit/analysis/amplicon/rev_comp_se_primers.py
mgnify_pipelines_toolkit/analysis/amplicon/standard_primer_matching.py
mgnify_pipelines_toolkit/analysis/shared/__init__.py
mgnify_pipelines_toolkit/analysis/shared/fastq_suffix_header_check.py
mgnify_pipelines_toolkit/analysis/shared/get_subunits.py
mgnify_pipelines_toolkit/analysis/shared/get_subunits_coords.py
mgnify_pipelines_toolkit/analysis/shared/library_strategy_check.py
mgnify_pipelines_toolkit/analysis/shared/mapseq2biom.py
mgnify_pipelines_toolkit/constants/regex_ambiguous_bases.py
mgnify_pipelines_toolkit/constants/regex_fasta_header.py
mgnify_pipelines_toolkit/constants/tax_ranks.py
mgnify_pipelines_toolkit/constants/thresholds.py
mgnify_pipelines_toolkit/constants/var_region_coordinates.py
mgnify_pipelines_toolkit/utils/__init__.py
mgnify_pipelines_toolkit/utils/fasta_to_delimited.py
mgnify_pipelines_toolkit/utils/get_mpt_version.py