biopandas>=0.4.1
biopython
bioservices>=1.10.0
deepdiff
loguru
matplotlib>=3.4.3
multipledispatch
networkx
numpy<1.24.0
pandas
plotly
pydantic
rich
rich-click
seaborn
pyyaml<6.0,>=5.1
scikit-learn
scipy
tqdm
typing_extensions
wget
xarray
torchtyping

[all]
pytest-xdist
interrogate
nbstripout
black
isort
pytest
nbval
pandoc
pytest-cov
pycodestyle
pre-commit
flake8
hypothesis
pydocstyle

[dev]
black
flake8
hypothesis
interrogate
isort
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist

[extras]
black
flake8
hypothesis
interrogate
isort
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist
