Metadata-Version: 2.1
Name: gRNAsearch
Version: 0.0.1
Summary: Search for guide RNA sites in PCR tags
Home-page: https://github.com/rhong3/gRNAsearch
Author: Runyu Hong
Author-email: Runyu.Hong@nyu.edu
License: UNKNOWN
Description: # **Search for guide RNA sites in PCR tags**
        ### Usage
         - Install the package version through pip `pip install gRNAsearch `
         - `from gRNAsearch.search import search`
         - `summary, frames = search(syn="../seq.fa", tag="../tag.csv", save=True, output_dir="~", output_name="gRNA")`
        ### Parameters 
        `search(syn, tag, save=True, output_dir='~', output_name="gRNA"):`
         - syn: full path to sequence file in '.fa' format
         - tag: PCR tag file
         - save: save the outputs in csv (default=True)
         - output_dir: output directory (full path) to save the files (default='~')
         - output_name: name of the output file (default="gRNA")
        ### Outputs
         - summary: the search results data frame
         - frames: the intermediate data frame with WT sequences
         
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3.6
Classifier: License :: OSI Approved :: MIT License
Description-Content-Type: text/markdown
