COPYING
MANIFEST.in
README.rst
setup.cfg
setup.py
TEToolkit/Common.py
TEToolkit/Constants.py
TEToolkit/EMAlgorithm.py
TEToolkit/GeneFeatures.py
TEToolkit/IntervalTree.py
TEToolkit/Normalization.py
TEToolkit/Prob.py
TEToolkit/TEindex.py
TEToolkit/__init__.py
TEToolkit/IO/FeatIO.py
TEToolkit/IO/ReadInputs.py
TEToolkit/IO/__init__.py
TEToolkit/ShortRead/ParseBEDFile.py
TEToolkit/ShortRead/__init__.py
TEtranscripts.egg-info/PKG-INFO
TEtranscripts.egg-info/SOURCES.txt
TEtranscripts.egg-info/dependency_links.txt
TEtranscripts.egg-info/not-zip-safe
TEtranscripts.egg-info/requires.txt
TEtranscripts.egg-info/top_level.txt
bin/TEcount
bin/TEtranscripts
doc/TEtranscripts_manual.docx