.dockerignore
.gitattributes
.gitignore
CHANGELOG.md
Dockerfile
MANIFEST.in
README.md
bitbucket-pipelines.yml
requirements.txt
setup.cfg
setup.py
versioneer.py
docker-slim/Dockerfile
hic3defdr/__init__.py
hic3defdr/_version.py
hic3defdr.egg-info/PKG-INFO
hic3defdr.egg-info/SOURCES.txt
hic3defdr.egg-info/dependency_links.txt
hic3defdr.egg-info/requires.txt
hic3defdr.egg-info/top_level.txt
hic3defdr/analysis/__init__.py
hic3defdr/analysis/alternatives.py
hic3defdr/analysis/analysis.py
hic3defdr/analysis/core.py
hic3defdr/analysis/plotting.py
hic3defdr/analysis/simulation.py
hic3defdr/plotting/__init__.py
hic3defdr/plotting/dispersion.py
hic3defdr/plotting/distance_bias.py
hic3defdr/plotting/distance_dependence.py
hic3defdr/plotting/fdr.py
hic3defdr/plotting/fn_vs_fp.py
hic3defdr/plotting/grid.py
hic3defdr/plotting/heatmap.py
hic3defdr/plotting/histograms.py
hic3defdr/plotting/ma.py
hic3defdr/plotting/roc.py
hic3defdr/util/__init__.py
hic3defdr/util/binning.py
hic3defdr/util/classification.py
hic3defdr/util/cluster_table.py
hic3defdr/util/clusters.py
hic3defdr/util/dispersion.py
hic3defdr/util/evaluation.py
hic3defdr/util/lowess.py
hic3defdr/util/lrt.py
hic3defdr/util/matrices.py
hic3defdr/util/parallelization.py
hic3defdr/util/printing.py
hic3defdr/util/progress.py
hic3defdr/util/scaled_nb.py
hic3defdr/util/scaling.py
hic3defdr/util/simulation.py
hic3defdr/util/thresholding.py
images/correlation.png
images/dd.png
images/ddr.png
images/disp_comparison.png
images/distance_bias.png
images/dvr.png
images/fdr.png
images/fdr_by_dist.png
images/fn_vs_fp.png
images/grid.png
images/heatmap.png
images/heatmap_mean.png
images/heatmap_sig.png
images/ma.png
images/mvr.png
images/mvr_25.png
images/pvalue_dist.png
images/qvalue_dist.png
images/roc.png
images/roc_by_dist.png
images/zoomin.png
test/test.py
test/test_lowess.py
test/test_map.py