MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
scgenome/__init__.py
scgenome/_version.py
scgenome/breakpointdata.py
scgenome/cnclones.py
scgenome/cncluster.py
scgenome/cnfilter.py
scgenome/cnplot.py
scgenome/cntransitions.py
scgenome/csvutils.py
scgenome/jointcnmodels.py
scgenome/refgenome.py
scgenome/snpdata.py
scgenome/snvdata.py
scgenome/snvphylo.py
scgenome/utils.py
scgenome.egg-info/PKG-INFO
scgenome.egg-info/SOURCES.txt
scgenome.egg-info/dependency_links.txt
scgenome.egg-info/requires.txt
scgenome.egg-info/top_level.txt
scgenome/data/grch38.fa.fai
scgenome/data/hg19.fa.fai
scgenome/data/mm10.fa.fai
scgenome/datasets/__init__.py
scgenome/datasets/_datasets.py
scgenome/datasets/data/OV2295_HMMCopy_reduced.h5ad
scgenome/loaders/__init__.py
scgenome/loaders/align.py
scgenome/loaders/allele.py
scgenome/loaders/annotation.py
scgenome/loaders/breakpoint.py
scgenome/loaders/hmmcopy.py
scgenome/loaders/qc.py
scgenome/loaders/snv.py
scgenome/loaders/utils.py
scgenome/plotting/__init__.py
scgenome/plotting/cn.py
scgenome/plotting/heatmap.py
scgenome/plotting/phylo.py
scgenome/plotting/qc.py
scgenome/preprocessing/__init__.py
scgenome/preprocessing/filtering.py
scgenome/preprocessing/load_cn.py
scgenome/preprocessing/load_snv.py
scgenome/preprocessing/transform.py
scgenome/tests/__init__.py
scgenome/tools/__init__.py
scgenome/tools/binfeat.py
scgenome/tools/cluster.py
scgenome/tools/concat.py
scgenome/tools/genes.py
scgenome/tools/pca.py
scgenome/tools/phylo.py
scgenome/tools/sorting.py