.clang-format
.gitignore
.gitmodules
.pylintrc
.readthedocs.yml
.travis.yml
LICENSE.rst
MANIFEST.in
Makefile
README.rst
build-doc.yml
prefix.rst
references.rst
setup.cfg
setup.py
tox.ini
.github/workflows/wheel.yml
metacells/__init__.py
metacells/check_avx2.py
metacells/extensions.cpp
metacells/parameters.py
metacells/py.typed
metacells/should_check_avx2.py
metacells/version.py
metacells.egg-info/PKG-INFO
metacells.egg-info/SOURCES.txt
metacells.egg-info/dependency_links.txt
metacells.egg-info/entry_points.txt
metacells.egg-info/requires.txt
metacells.egg-info/top_level.txt
metacells/pipeline/__init__.py
metacells/pipeline/clean.py
metacells/pipeline/collect.py
metacells/pipeline/direct.py
metacells/pipeline/divide_and_conquer.py
metacells/pipeline/feature.py
metacells/pipeline/related_genes.py
metacells/pipeline/umap.py
metacells/scripts/__init__.py
metacells/scripts/timing.py
metacells/tools/__init__.py
metacells/tools/apply.py
metacells/tools/candidates.py
metacells/tools/deviants.py
metacells/tools/dissolve.py
metacells/tools/distinct.py
metacells/tools/downsample.py
metacells/tools/filter.py
metacells/tools/group.py
metacells/tools/high.py
metacells/tools/knn_graph.py
metacells/tools/layout.py
metacells/tools/mask.py
metacells/tools/named.py
metacells/tools/noisy_lonely.py
metacells/tools/project.py
metacells/tools/properly_sampled.py
metacells/tools/quality.py
metacells/tools/rare.py
metacells/tools/similarity.py
metacells/utilities/__init__.py
metacells/utilities/annotation.py
metacells/utilities/computation.py
metacells/utilities/documentation.py
metacells/utilities/hardware_info.py
metacells/utilities/logging.py
metacells/utilities/parallel.py
metacells/utilities/py.typed
metacells/utilities/timing.py
metacells/utilities/typing.py
pybind11/include/pybind11/attr.h
pybind11/include/pybind11/buffer_info.h
pybind11/include/pybind11/cast.h
pybind11/include/pybind11/chrono.h
pybind11/include/pybind11/common.h
pybind11/include/pybind11/complex.h
pybind11/include/pybind11/eigen.h
pybind11/include/pybind11/embed.h
pybind11/include/pybind11/eval.h
pybind11/include/pybind11/functional.h
pybind11/include/pybind11/iostream.h
pybind11/include/pybind11/numpy.h
pybind11/include/pybind11/operators.h
pybind11/include/pybind11/options.h
pybind11/include/pybind11/pybind11.h
pybind11/include/pybind11/pytypes.h
pybind11/include/pybind11/stl.h
pybind11/include/pybind11/stl_bind.h
pybind11/include/pybind11/detail/class.h
pybind11/include/pybind11/detail/common.h
pybind11/include/pybind11/detail/descr.h
pybind11/include/pybind11/detail/init.h
pybind11/include/pybind11/detail/internals.h
pybind11/include/pybind11/detail/typeid.h
tests/__init__.py
tests/test_data.py
tests/test_utilities.py