Metadata-Version: 1.2
Name: celloracle
Version: 0.10.5
Summary: in silico gene perturbation analysis and GRN analysis with single cell data
Home-page: https://github.com/morris-lab/CellOracle
Author: Kenji Kamimoto
Author-email: kamimoto@wustl.edu
License: Apache License Version 2.0
Description: CellOracle
        ==========
        
        |Build Status|
        
        CellOracle is a python library for in silico gene perturbation analyses
        using single-cell omics data and Gene Regulatory Network models.
        
        For more information, please read our bioRxiv preprint: `CellOracle:
        Dissecting cell identity via network inference and in silico gene
        perturbation <https://www.biorxiv.org/content/10.1101/2020.02.17.947416v3>`__.
        
        Documentation, Codes, and Tutorials
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        CellOracle documentation is available through the links below.
        
        `Web
        documentation <https://morris-lab.github.io/CellOracle.documentation/>`__
        
        Questions and errors
        ~~~~~~~~~~~~~~~~~~~~
        
        If you have a question, error, bug, or problem, please use the `Github
        issue page <https://github.com/morris-lab/CellOracle/issues>`__.
        
        Supported Species and reference genomes
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        -  Human: [‘hg38’, ‘hg19’]
        -  Mouse: [‘mm10’, ‘mm9’]
        -  S.cerevisiae: [“sacCer2”, “sacCer3”]
        -  Zebrafish: [“danRer7”, “danRer10”, “danRer11”]
        -  Xenopus: [“xenTro2”, “xenTro3”]
        -  Rat: [“rn4”, “rn5”, “rn6”]
        -  Drosophila: [“dm3”, “dm6”]
        -  C.elegans: [“ce6”, “ce10”]
        -  Arabidopsis: [“TAIR10”]
        -  Chicken: [“galGal4”, “galGal5”, “galGal6”]
        -  Guinea Pig: [“Cavpor3.0”]
        
        Please let us know through `Github issue
        page <https://github.com/morris-lab/CellOracle/issues>`__ if you have a
        request for another reference genome.
        
        Changelog
        ~~~~~~~~~
        
        Please go to `this
        page <https://morris-lab.github.io/CellOracle.documentation/changelog/index.html>`__.
        
        .. |Build Status| image:: https://app.travis-ci.com/morris-lab/CellOracle.svg?branch=master
           :target: https://app.travis-ci.com/morris-lab/CellOracle
        
Keywords: scRNA-seq,GRN,simulation,gene perturbation
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6
