Metadata-Version: 2.1
Name: BSBolt
Version: 1.2.2
Summary: Bisulfite Sequencing Processing Platform
Home-page: https://github.com/NuttyLogic/BSBolt
Author: Colin P. Farrell
Author-email: colinpfarrell@gmail.com
License: MIT
Project-URL: Documentation, https://bsbolt.readthedocs.io/en/latest/
Description: # **BSBolt (BiSulfite Bolt)**
        ## A fast and safe bisulfite sequencing processing platform
        
        [BiSuflite Bolt (BSBolt)](https://github.com/NuttyLogic/BSBolt); a fast and scalable bisulfite sequencing 
        processing platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing 
        read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated 
        to work with a wide array of bisulfite sequencing data,including whole genome bisulfite sequencing (WGBS), 
        reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data. 
        BSBolt utilizes forked versions of [BWA](https://github.com/lh3/bwa) 
        and [WGSIM](https://github.com/lh3/wgsim) for read alignment and read simulation respectively. 
        BSBolt is released under the MIT license.
         
        ## Documentation
        
        BSBolt documentation can be found at [bsbolt.readthedocs.io](https://bsbolt.readthedocs.io).
        
        ### Installation
        
        BSBolt alignment is performed using a modified version of [BWA](https://github.com/lh3/bwa). Read simulation is carried 
        out using a modified version of [wgsim](https://github.com/lh3/wgsim). 
        
        
        Install through PyPi
        
        ```shell
        pip3 install BSBolt -v
        ```
        
        Install from source
        ```shell
        git clone git@github.com:NuttyLogic/BSBolt.git
        cd BSBolt-master
        python3 setup.py install .
        ```
        
        
Platform: Linux
Platform: Mac OS-X
Platform: Unix
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires: pysam
Requires: numpy
Requires: tqdm
Requires-Python: >=3.6
Description-Content-Type: text/markdown
