MANIFEST.in
README.md
setup.py
BSBolt/__init__.py
BSBolt/__main__.py
BSBolt.egg-info/PKG-INFO
BSBolt.egg-info/SOURCES.txt
BSBolt.egg-info/dependency_links.txt
BSBolt.egg-info/entry_points.txt
BSBolt.egg-info/not-zip-safe
BSBolt.egg-info/requires.txt
BSBolt.egg-info/top_level.txt
BSBolt/Align/AlignReads.py
BSBolt/Align/__init__.py
BSBolt/CallMethylation/CallValues.py
BSBolt/CallMethylation/CallVector.py
BSBolt/CallMethylation/ProcessMethylationContigs.py
BSBolt/CallMethylation/__init__.py
BSBolt/External/BWA/COPYING
BSBolt/External/BWA/Makefile
BSBolt/External/BWA/QSufSort.c
BSBolt/External/BWA/QSufSort.h
BSBolt/External/BWA/bntseq.c
BSBolt/External/BWA/bntseq.h
BSBolt/External/BWA/bs_helpers.cpp
BSBolt/External/BWA/bs_helpers.h
BSBolt/External/BWA/bs_sorter.cpp
BSBolt/External/BWA/bs_sorter.h
BSBolt/External/BWA/bs_sorter_wrapper.cpp
BSBolt/External/BWA/bs_sorter_wrapper.h
BSBolt/External/BWA/bwa.c
BSBolt/External/BWA/bwa.h
BSBolt/External/BWA/bwamem.c
BSBolt/External/BWA/bwamem.h
BSBolt/External/BWA/bwamem_extra.c
BSBolt/External/BWA/bwamem_pair.c
BSBolt/External/BWA/bwashm.c
BSBolt/External/BWA/bwt.c
BSBolt/External/BWA/bwt.h
BSBolt/External/BWA/bwt_gen.c
BSBolt/External/BWA/bwtindex.c
BSBolt/External/BWA/fastmap.c
BSBolt/External/BWA/fastmap.h
BSBolt/External/BWA/is.c
BSBolt/External/BWA/kbtree.h
BSBolt/External/BWA/khash.h
BSBolt/External/BWA/kopen.c
BSBolt/External/BWA/kseq.h
BSBolt/External/BWA/ksort.h
BSBolt/External/BWA/kstring.c
BSBolt/External/BWA/kstring.h
BSBolt/External/BWA/ksw.c
BSBolt/External/BWA/ksw.h
BSBolt/External/BWA/kthread.c
BSBolt/External/BWA/kvec.h
BSBolt/External/BWA/main.c
BSBolt/External/BWA/malloc_wrap.c
BSBolt/External/BWA/malloc_wrap.h
BSBolt/External/BWA/rle.c
BSBolt/External/BWA/rle.h
BSBolt/External/BWA/rope.c
BSBolt/External/BWA/rope.h
BSBolt/External/BWA/utils.c
BSBolt/External/BWA/utils.h
BSBolt/External/WGSIM/Makefile
BSBolt/External/WGSIM/src/kseq.h
BSBolt/External/WGSIM/src/wgsim.cpp
BSBolt/Impute/__init__.py
BSBolt/Impute/kNN_Impute.py
BSBolt/Impute/Imputation/EuclideanDistance.py
BSBolt/Impute/Imputation/GenomeImputation.py
BSBolt/Impute/Imputation/GenomeImputationWindows.py
BSBolt/Impute/Imputation/__init__.py
BSBolt/Impute/Impute_Utils/ImputationFunctions.py
BSBolt/Impute/Impute_Utils/__init__.py
BSBolt/Impute/Validation/ImputationAssessment.py
BSBolt/Impute/Validation/MaskValues.py
BSBolt/Impute/Validation/__init__.py
BSBolt/Index/IndexOutput.py
BSBolt/Index/RRBSCutSites.py
BSBolt/Index/RRBSIndex.py
BSBolt/Index/WholeGenomeIndex.py
BSBolt/Index/__init__.py
BSBolt/Matrix/MatrixAggregator.py
BSBolt/Matrix/SiteAggregator.py
BSBolt/Matrix/SiteCounter.py
BSBolt/Matrix/__init__.py
BSBolt/Simulate/SetCyotsineMethylation.py
BSBolt/Simulate/SimulateMethylatedReads.py
BSBolt/Simulate/SimulationOutput.py
BSBolt/Simulate/StreamSim.py
BSBolt/Simulate/__init__.py
BSBolt/Utils/AlignmentEvaluation.py
BSBolt/Utils/AlnIterator.py
BSBolt/Utils/CGmapIterator.py
BSBolt/Utils/FastaIterator.py
BSBolt/Utils/FastqIterator.py
BSBolt/Utils/Launcher.py
BSBolt/Utils/MatrixIterator.py
BSBolt/Utils/Parser.py
BSBolt/Utils/ParserHelpMessages.py
BSBolt/Utils/UtilityFunctions.py
BSBolt/Utils/__init__.py
BSBolt/Variant/__init__.py