.gitignore
CMakeLists.txt
LICENSE
pyproject.toml
requirements.txt
setup.py
external/.gitattributes
external/README.md
external/pybind/CMakeLists.txt
external/pybind/LICENSE
external/pybind/include/pybind11/attr.h
external/pybind/include/pybind11/buffer_info.h
external/pybind/include/pybind11/cast.h
external/pybind/include/pybind11/chrono.h
external/pybind/include/pybind11/common.h
external/pybind/include/pybind11/complex.h
external/pybind/include/pybind11/eigen.h
external/pybind/include/pybind11/embed.h
external/pybind/include/pybind11/eval.h
external/pybind/include/pybind11/functional.h
external/pybind/include/pybind11/iostream.h
external/pybind/include/pybind11/numpy.h
external/pybind/include/pybind11/operators.h
external/pybind/include/pybind11/options.h
external/pybind/include/pybind11/pybind11.h
external/pybind/include/pybind11/pytypes.h
external/pybind/include/pybind11/stl.h
external/pybind/include/pybind11/stl_bind.h
external/pybind/include/pybind11/detail/class.h
external/pybind/include/pybind11/detail/common.h
external/pybind/include/pybind11/detail/descr.h
external/pybind/include/pybind11/detail/init.h
external/pybind/include/pybind11/detail/internals.h
external/pybind/include/pybind11/detail/typeid.h
external/pybind/tools/FindCatch.cmake
external/pybind/tools/FindEigen3.cmake
external/pybind/tools/FindPythonLibsNew.cmake
external/pybind/tools/check-style.sh
external/pybind/tools/libsize.py
external/pybind/tools/mkdoc.py
external/pybind/tools/pybind11Config.cmake.in
external/pybind/tools/pybind11Tools.cmake
gmxapi/.gitignore
gmxapi/__init__.py
gmxapi/_logging.py
gmxapi/abc.py
gmxapi/commandline.py
gmxapi/datamodel.py
gmxapi/exceptions.py
gmxapi/export_context.cpp
gmxapi/export_exceptions.cpp
gmxapi/export_system.cpp
gmxapi/export_tprfile.cpp
gmxapi/gmxconfig.json.in
gmxapi/launch_020.cpp
gmxapi/launch_021.cpp
gmxapi/module.cpp
gmxapi/module.h
gmxapi/operation.py
gmxapi/pycontext.cpp
gmxapi/pycontext.h
gmxapi/pysystem.cpp
gmxapi/pysystem.h
gmxapi/testsupport.py
gmxapi/typing.py
gmxapi/version.py
gmxapi.egg-info/PKG-INFO
gmxapi.egg-info/SOURCES.txt
gmxapi.egg-info/dependency_links.txt
gmxapi.egg-info/not-zip-safe
gmxapi.egg-info/requires.txt
gmxapi.egg-info/top_level.txt
gmxapi/simulation/__init__.py
gmxapi/simulation/abc.py
gmxapi/simulation/context.py
gmxapi/simulation/fileio.py
gmxapi/simulation/mdrun.py
gmxapi/simulation/modify_input.py
gmxapi/simulation/read_tpr.py
gmxapi/simulation/workflow.py
test/CMakeLists.txt
test/conftest.py
test/pytest.ini
test/test_commandline.py
test/test_exceptions.py
test/test_fileio.py
test/test_mdrun.py
test/test_operation.py
test/test_subgraph.py
test/testdata.json