.gitignore
.travis.yml
CHANGELOG.md
LICENSE
README.md
Tutorial.md
codecov.yml
setup.py
data/Saccharomyces_cerevisiae.ATAC.GSM1621339.bed
data/Saccharomyces_cerevisiae.R64-1-1.UTR.gtf
data/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
data/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.fai
data/Scer.cisbp.meme
inferelator_prior/__init__.py
inferelator_prior/expression_data_from_srr.py
inferelator_prior/make_regulator_bed.py
inferelator_prior/mkref.py
inferelator_prior/motif_information.py
inferelator_prior/network_from_motifs.py
inferelator_prior/network_from_motifs_fasta.py
inferelator_prior/pwm_to_meme.py
inferelator_prior.egg-info/PKG-INFO
inferelator_prior.egg-info/SOURCES.txt
inferelator_prior.egg-info/dependency_links.txt
inferelator_prior.egg-info/not-zip-safe
inferelator_prior.egg-info/requires.txt
inferelator_prior.egg-info/top_level.txt
inferelator_prior/motifs/__init__.py
inferelator_prior/motifs/_motif.py
inferelator_prior/motifs/fimo.py
inferelator_prior/motifs/homer.py
inferelator_prior/motifs/homer_motif.py
inferelator_prior/motifs/meme.py
inferelator_prior/motifs/motif_loader.py
inferelator_prior/motifs/motif_scan.py
inferelator_prior/motifs/pwm.py
inferelator_prior/motifs/transfac.py
inferelator_prior/processor/__init__.py
inferelator_prior/processor/bedtools.py
inferelator_prior/processor/gtf.py
inferelator_prior/processor/htseq_count.py
inferelator_prior/processor/kallisto.py
inferelator_prior/processor/matrix.py
inferelator_prior/processor/prior.py
inferelator_prior/processor/samtools.py
inferelator_prior/processor/species_constants.py
inferelator_prior/processor/srr.py
inferelator_prior/processor/star.py
inferelator_prior/processor/utils.py
inferelator_prior/tests/__init__.py
inferelator_prior/tests/test_motif.py
inferelator_prior/tests/test_motif_scan.py
inferelator_prior/tests/test_network_maker.py
inferelator_prior/tests/test_prior.py
inferelator_prior/tests/test_srr.py
inferelator_prior/tests/test_star.py
inferelator_prior/tests/test_utils.py
inferelator_prior/tests/artifacts/M00799_2.00.txt
inferelator_prior/tests/artifacts/Saccharomyces_cerevisiae.R64-1-1.GAL_OPERON.gtf
inferelator_prior/tests/artifacts/sc64_mito.fasta
inferelator_prior/tests/artifacts/sc64_mito.fasta.fai
inferelator_prior/tests/artifacts/sc64_mito.gtf
inferelator_prior/tests/artifacts/test.meme
inferelator_prior/tests/artifacts/test.motif
inferelator_prior/tests/artifacts/test.transfac.dat
inferelator_prior/tests/artifacts/test_alignment.fastq.gz
inferelator_prior/tests/artifacts/test_ecori.meme
inferelator_prior/tests/artifacts/test_gal4.meme
inferelator_prior/tests/artifacts/test_info_matrix.tsv.gz
inferelator_prior/tests/artifacts/test_motif_search.bed
inferelator_prior/tests/artifacts/test_motif_search.fasta
inferelator_prior/tests/artifacts/test_motif_search.fasta.fai
inferelator_prior/tests/artifacts/test_motif_search.gtf
inferelator_prior/velocity/__init__.py
inferelator_prior/velocity/calc.py