CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
fig/logo.png
include/setriq/pairwise_distance_computation.h
include/setriq/alignment/SmithWaterman.h
include/setriq/alignment/SubstitutionMatrix.h
include/setriq/metrics/CdrDist.h
include/setriq/metrics/Hamming.h
include/setriq/metrics/Jaro.h
include/setriq/metrics/JaroWinkler.h
include/setriq/metrics/Levenshtein.h
include/setriq/metrics/LongestCommonSubstring.h
include/setriq/metrics/OptimalStringAlignment.h
include/setriq/metrics/TcrDist.h
include/setriq/utils/type_defs.h
setriq.egg-info/PKG-INFO
setriq.egg-info/SOURCES.txt
setriq.egg-info/dependency_links.txt
setriq.egg-info/requires.txt
setriq.egg-info/top_level.txt
src/setriq/__init__.py
src/setriq/_C/python_wrapper.cpp
src/setriq/_C/alignment/SmithWaterman.cpp
src/setriq/_C/alignment/SubstitutionMatrix.cpp
src/setriq/_C/metrics/CdrDist.cpp
src/setriq/_C/metrics/Hamming.cpp
src/setriq/_C/metrics/Jaro.cpp
src/setriq/_C/metrics/JaroWinkler.cpp
src/setriq/_C/metrics/Levenshtein.cpp
src/setriq/_C/metrics/LongestCommonSubstring.cpp
src/setriq/_C/metrics/OptimalStringAlignment.cpp
src/setriq/_C/metrics/TcrDist.cpp
src/setriq/data/blosum-45.json
src/setriq/data/blosum-62.json
src/setriq/data/blosum-90.json
src/setriq/modules/__init__.py
src/setriq/modules/distances.py
src/setriq/modules/single_dispatch.py
src/setriq/modules/substitution.py
src/setriq/modules/utils.py