LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
seqcluster/__init__.py
seqcluster/collapse.py
seqcluster/command_line.py
seqcluster/create_cluster_info.py
seqcluster/create_report.py
seqcluster/explore_cluster.py
seqcluster/install.py
seqcluster/make_clusters.py
seqcluster/make_predictions.py
seqcluster/prepare_data.py
seqcluster/stats.py
seqcluster.egg-info/PKG-INFO
seqcluster.egg-info/SOURCES.txt
seqcluster.egg-info/dependency_links.txt
seqcluster.egg-info/entry_points.txt
seqcluster.egg-info/not-zip-safe
seqcluster.egg-info/top_level.txt
seqcluster/annotate/__init__.py
seqcluster/annotate/coral.py
seqcluster/db/__init__.py
seqcluster/detect/__init__.py
seqcluster/detect/cluster.py
seqcluster/detect/description.py
seqcluster/detect/metacluster.py
seqcluster/function/__init__.py
seqcluster/function/coral.py
seqcluster/function/peakdetect.py
seqcluster/function/predictions.py
seqcluster/function/rnafold.py
seqcluster/function/target.py
seqcluster/html/HTML.py
seqcluster/html/__init__.py
seqcluster/libs/__init__.py
seqcluster/libs/annotation.py
seqcluster/libs/barchart.py
seqcluster/libs/bayes.py
seqcluster/libs/classes.py
seqcluster/libs/config.py
seqcluster/libs/do.py
seqcluster/libs/expchart.py
seqcluster/libs/fastq.py
seqcluster/libs/inputs.py
seqcluster/libs/logger.py
seqcluster/libs/multimap.py
seqcluster/libs/mystats.py
seqcluster/libs/parameters.py
seqcluster/libs/parse.py
seqcluster/libs/peaks.py
seqcluster/libs/pysen.py
seqcluster/libs/read.py
seqcluster/libs/report.py
seqcluster/libs/sam2bed.py
seqcluster/libs/seqviz.py
seqcluster/libs/simulator.py
seqcluster/libs/stats.py
seqcluster/libs/table.py
seqcluster/libs/thinkbayes.py
seqcluster/libs/tool.py
seqcluster/libs/utils.py
seqcluster/methods/__init__.py
seqcluster/seqbuster/__init__.py
seqcluster/seqbuster/realign.py
seqcluster/seqbuster/snps.py
seqcluster/templates/__init__.py
seqcluster/templates/cluster
seqcluster/templates/info.css
seqcluster/templates/jquery.tablesorter.min.js
seqcluster/templates/main
seqcluster/templates/report.rmd
seqcluster/templates/style.css
test/__init__.py
test/test_automated_analysis.py
test/test_cluster.py
test/test_database.py
test/test_preparedata.py