.gitignore
.gitlab-ci.yml
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
requirements-dev.txt
setup.cfg
setup.py
examples/convert_raw_tiffs_to_h5_multiprocessing.py
examples/follicle_segmentation_metrics.py
examples/make_follicle_cross_validation.py
examples/make_ovary_cross_validation.py
examples/measure_follicles.py
examples/prepare_follicle_dataset.py
examples/screen_threshold_iou.py
examples/segment_all_from_fold.py
examples/segment_follicles.py
examples/segment_follicles_directory.py
examples/segment_ovary_cross_validation.py
examples/segment_ovary_directory.py
ovary_analysis/__init__.py
ovary_analysis/_version.py
ovary_analysis.egg-info/PKG-INFO
ovary_analysis.egg-info/SOURCES.txt
ovary_analysis.egg-info/dependency_links.txt
ovary_analysis.egg-info/not-zip-safe
ovary_analysis.egg-info/requires.txt
ovary_analysis.egg-info/top_level.txt
ovary_analysis/convert/__init__.py
ovary_analysis/convert/follicle_dataset.py
ovary_analysis/convert/labels.py
ovary_analysis/convert/raw_data.py
ovary_analysis/io/__init__.py
ovary_analysis/io/hdf5_io.py
ovary_analysis/io/label_im.py
ovary_analysis/io/raw_im.py
ovary_analysis/measure/__init__.py
ovary_analysis/measure/measure_utils.py
ovary_analysis/measure/vol_measure.py
ovary_analysis/post_process/__init__.py
ovary_analysis/post_process/follicles.py
ovary_analysis/post_process/ovary.py
ovary_analysis/post_process/plot.py
ovary_analysis/post_process/segmentation_metrics.py
ovary_analysis/predict/__init__.py
ovary_analysis/train/__init__.py
ovary_analysis/train/follicle_seg.py
ovary_analysis/train/ovary_seg.py
ovary_analysis/train/training_utils.py
ovary_analysis/utils/__init__.py
ovary_analysis/utils/config_utils.py
ovary_analysis/utils/file_names.py
ovary_analysis/utils/file_table.py
ovary_analysis/utils/image.py
ovary_analysis/utils/measurement_table.py
ovary_analysis/utils/submission_utils.py
ovary_analysis/utils/time
ovary_analysis/utils/time.py
ovary_analysis/utils/tests/test_file_names.py
ovary_analysis/utils/tests/test_image.py
ovary_analysis/utils/tests/test_measurement_table.py