LICENSE
README.md
pyproject.toml
setup.py
batch_seqr_loader/__init__.py
batch_seqr_loader/batch_workflow.py
batch_seqr_loader/seqr_load.py
gcloud_dataproc/__init__.py
gcloud_dataproc/create_disk_snapshots.py
gcloud_dataproc/create_persistent_es_nodes.py
gcloud_dataproc/delete_cluster.py
gcloud_dataproc/delete_job.py
gcloud_dataproc/delete_temp_loading_nodes.py
gcloud_dataproc/describe_cluster.py
gcloud_dataproc/describe_job.py
gcloud_dataproc/kill_job.py
gcloud_dataproc/list_clusters.py
gcloud_dataproc/list_jobs.py
gcloud_dataproc/load_dataset.py
gcloud_dataproc/resize_cluster.py
gcloud_dataproc/restore_disks_from_snapshots.py
gcloud_dataproc/run_locally.py
gcloud_dataproc/wait_for_job_and_print_logs.py
gcloud_dataproc/utils/__init__.py
gcloud_dataproc/utils/machine_types.py
gcloud_dataproc/utils/seqr_api.py
gcloud_dataproc/v02/__init__.py
gcloud_dataproc/v02/create_cluster_GRCh37.py
gcloud_dataproc/v02/create_cluster_GRCh38.py
gcloud_dataproc/v02/create_cluster_without_VEP.py
gcloud_dataproc/v02/run_script.py
gcloud_dataproc/v02/run_script_GRCh37.py
gcloud_dataproc/v02/run_script_GRCh38.py
hail_scripts/__init__.py
hail_scripts/shared/__init__.py
hail_scripts/shared/elasticsearch_client.py
hail_scripts/shared/elasticsearch_client_v7.py
hail_scripts/shared/elasticsearch_utils.py
hail_scripts/shared/elasticsearch_utils_tests.py
hail_scripts/v01/__init__.py
hail_scripts/v01/convert_tsv_to_key_table.py
hail_scripts/v01/convert_tsv_to_vds.py
hail_scripts/v01/convert_vcf_to_vds.py
hail_scripts/v01/create_subset.py
hail_scripts/v01/export_vds_to_tsv.py
hail_scripts/v01/load_clinvar_to_es.py
hail_scripts/v01/load_dataset_to_es.py
hail_scripts/v01/load_gnomad_coverage_to_es.py
hail_scripts/v01/load_gnomad_to_es.py
hail_scripts/v01/print_elasticsearch_stats.py
hail_scripts/v01/print_imputed_sex.py
hail_scripts/v01/print_keytable_schema.py
hail_scripts/v01/print_vds_schema.py
hail_scripts/v01/print_vds_stats.py
hail_scripts/v01/run_vep.py
hail_scripts/v01/update_reference_data_in_existing_index.py
hail_scripts/v01/utils/__init__.py
hail_scripts/v01/utils/add_1kg_phase3.py
hail_scripts/v01/utils/add_cadd.py
hail_scripts/v01/utils/add_clinvar.py
hail_scripts/v01/utils/add_combined_reference_data.py
hail_scripts/v01/utils/add_dbnsfp.py
hail_scripts/v01/utils/add_eigen.py
hail_scripts/v01/utils/add_exac.py
hail_scripts/v01/utils/add_gene_constraint.py
hail_scripts/v01/utils/add_gnomad.py
hail_scripts/v01/utils/add_gnomad_coverage.py
hail_scripts/v01/utils/add_hgmd.py
hail_scripts/v01/utils/add_mpc.py
hail_scripts/v01/utils/add_omim.py
hail_scripts/v01/utils/add_primate_ai.py
hail_scripts/v01/utils/add_splice_ai.py
hail_scripts/v01/utils/add_topmed.py
hail_scripts/v01/utils/computed_fields.py
hail_scripts/v01/utils/elasticsearch_client.py
hail_scripts/v01/utils/elasticsearch_utils.py
hail_scripts/v01/utils/fam_file_utils.py
hail_scripts/v01/utils/fam_file_utils_tests.py
hail_scripts/v01/utils/gcloud_utils.py
hail_scripts/v01/utils/hail_utils.py
hail_scripts/v01/utils/validate_vds.py
hail_scripts/v01/utils/vds_schema_string_utils.py
hail_scripts/v01/utils/vds_utils.py
hail_scripts/v02/__init__.py
hail_scripts/v02/convert_vcf_to_hail.py
hail_scripts/v02/export_table_to_es.py
hail_scripts/v02/load_clinvar_to_es.py
hail_scripts/v02/update_reference_data_in_existing_index.py
hail_scripts/v02/utils/__init__.py
hail_scripts/v02/utils/clinvar.py
hail_scripts/v02/utils/elasticsearch_client.py
hail_scripts/v02/utils/elasticsearch_utils.py
hail_scripts/v02/utils/hail_utils.py
hail_scripts/v02/utils/computed_fields/__init__.py
hail_scripts/v02/utils/computed_fields/flags.py
hail_scripts/v02/utils/computed_fields/test_flags.py
hail_scripts/v02/utils/computed_fields/test_variant_id.py
hail_scripts/v02/utils/computed_fields/variant_id.py
hail_scripts/v02/utils/computed_fields/vep.py
kubernetes/__init__.py
kubernetes/kubectl_utils.py
kubernetes/network_utils.py
kubernetes/shell_utils.py
kubernetes/yaml_settings_utils.py
seqr_loader.egg-info/PKG-INFO
seqr_loader.egg-info/SOURCES.txt
seqr_loader.egg-info/dependency_links.txt
seqr_loader.egg-info/not-zip-safe
seqr_loader.egg-info/top_level.txt
sv_pipeline/__init__.py
sv_pipeline/load_data.py