Metadata-Version: 2.1
Name: cgt
Version: 0.1.1
Summary: Tools for representing genomes in sage
Home-page: https://github.com/js51/Circular-genome-tools
Author: Joshua Stevenson
Author-email: joshua.stevenson@utas.edu.au
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3
Description-Content-Type: text/markdown
License-File: LICENSE

# Circular genome tools (cgt)
[![](https://img.shields.io/pypi/v/cgt.svg)](https://pypi.org/project/cgt/) [![](https://github.com/js51/Circular-genome-tools/actions/workflows/python-publish.yml/badge.svg)](https://github.com/js51/Circular-genome-tools/actions/workflows/python-publish.yml)

A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for converting between representations as well as visualisations using matplotlib.

To install and use this package, paste the following command in your terminal

`sage -pip install cgt`

and use `import cgt` in a sage script or environment.

**Note:** you will need to at least have Sage version 9.0 installed, and have the GAP package `repsn` installed for the copy of GAP that sits inside Sage. If you aren't sure how to do this, see the installation instructions in [`HOW-TO-INSTALL.md`](https://github.com/js51/Circular-genome-tools/blob/a006bb522c370ec46831dd202c1a67b47ba72726/HOW_TO_INSTALL.md)


