Metadata-Version: 2.1
Name: albion_similog
Version: 0.3.5
Summary: Compute a consensus dataseries with FAMSA algorithm.
Home-page: UNKNOWN
Author: Oslandia
Author-email: infos@oslandia.com
Maintainer: Oslandia
Maintainer-email: infos@oslandia.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: Implementation :: CPython
Description-Content-Type: text/markdown
Provides-Extra: dev

# Albion Similog

This project is dedicated to the generation of possible edges within the
[Albion](https://gitlab.com/Oslandia/albion) framework, through the way of
[FAMSA](https://github.com/refresh-bio/FAMSA) algorithm.

`albion_similog` works with Python3.8.

## Installation

### Dependencies

This package works with a few dependencies from the biology ecosystem, like `biopython` or
`scikit-bio`. They are installable easily through `pip`.

There is a notable exception with `FAMSA`, that should be patched for specific Albion purpose, and
compiled. Everything is managed through the `Makefile`.

### Debian/Ubuntu

```
$ virtualenv .venv
$ source .venv/bin/activate
(.venv) $ make install
```

### Windows

TODO


