numpy==1.26.0
pandas==2.1.1
openpyxl==3.1.2
xlrd==2.0.1
pyreadr==0.4.9
scipy==1.11.4
networkx==3.2.1
umap-learn==0.5.3
hydra-core==1.3.2
torch==2.1.0
torch_geometric==2.4.0
torchmetrics==1.2.1
lightning==2.1.2
wandb==0.15.8
matplotlib==3.7.2
adjustText==0.8
pydot==1.4.2
plotly==5.18.0
seaborn==0.12.2
scikit-learn==1.2.2
transformers==4.31.0
sentencepiece==0.1.99
biopython==1.81
goatools==1.3.1
intermine==1.13.0
gffutils==0.12
pandas-stubs==2.0.3.230814
types-tqdm==4.65.0.2
types-requests==2.31.0.2
sortedcontainers==2.4.0
attrs==23.1.0
pydantic==2.5.2
h5py==3.9.0
lmdb==1.4.1
aiohttp==3.8.5
pronto==2.5.4
nxontology==0.5.0
owlready2==0.45
python-dotenv==1.0.0
bumpver==2023.1129
pre-commit==3.3.3
pip-tools==7.1.0
snakeviz==2.2.0
twine==4.0.2
biocypher>=0.5.34

[dev]
black
bumpver
pip-tools
pytest
