Metadata-Version: 1.0
Name: bandwitch
Version: 0.3.3
Summary: Enzyme selection for DNA verification and identification
Home-page: https://github.com/Edinburgh-Genome-Foundry/BandWitch
Author: Zulko
Author-email: UNKNOWN
License: MIT
Description: BandWitch
        =========
        
        BandWitch is a Python library for the planning and analysis of restriction
        experiments in DNA assembly operations. BandWitch implements method to select
        the best enzyme(s) to validate or identify DNA assemblies. It also provides
        report generation methods to automatically validate/identify assemblies from
        experimental data.
        
        You can try BandWitch's enzyme suggestion feature in
        `this web demo <http://cuba.genomefoundry.org/digestion-selector>`_,
        and the sequence validation (from AATI fragment analyzer files) in
        `this other demo <http://cuba.genomefoundry.org/analyze-digests>`_
        
        Infos
        ------
        
        **PIP installation:**
        
        .. code:: bash
        
           pip install bandwitch
        
        **Web documentation:**
        
        `<https://edinburgh-genome-foundry.github.io/BandWitch/>`_
        
        **Github Page:**
        
        `<https://github.com/Edinburgh-Genome-Foundry/BandWitch>`_
        
        **Live demo:**
        
        Enzyme suggestion: `<http://cuba.genomefoundry.org/digestion-selector>`_
        
        Fragment analysis validation: `<http://cuba.genomefoundry.org/analyze-digests>`_
        
        **License:** MIT, Copyright Edinburgh Genome Foundry
        
        Screenshots
        -----------
        
        Enzymes selected by bandwitch to obtain **clear, optimal** patterns for all tested DNA constructs:
        
        .. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/BandWitch/master/examples/ideal_digestions.png
           :alt: [logo]
           :align: center
        
        Enzymes selected by bandwitch to obtain **significant differences** between the patterns of the tested constructs, so that a construct can be identified by its pattern:
        
        .. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/BandWitch/master/examples/separating_digestions.png
           :alt: [logo]
           :align: center
        
        More biology software
        -----------------------
        
        .. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
           :target: https://edinburgh-genome-foundry.github.io/
        
        BandWitch is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.
        
Keywords: Restriction enzyme synthetic biology DNA band patterns
Platform: UNKNOWN
