LICENSE.md
README.md
setup.py
CodonU/__init__.py
CodonU/main.py
CodonU/temp.py
CodonU/temp2.py
CodonU/temp3.py
CodonU.egg-info/PKG-INFO
CodonU.egg-info/SOURCES.txt
CodonU.egg-info/dependency_links.txt
CodonU.egg-info/top_level.txt
CodonU/analyzer/__init__.py
CodonU/analyzer/cai_comp.py
CodonU/analyzer/cbi_comp.py
CodonU/analyzer/enc_comp.py
CodonU/analyzer/internal_comp.py
CodonU/analyzer/rscu_comp.py
CodonU/correspondence_analysis/__init__.py
CodonU/correspondence_analysis/mca_codon_freq.py
CodonU/cua_errors/__init__.py
CodonU/cua_errors/codon_usage_err.py
CodonU/cua_errors/file_not_empty_err.py
CodonU/cua_errors/internal_stop_codon_err.py
CodonU/cua_errors/no_prot_err.py
CodonU/cua_errors/nucleotide_err.py
CodonU/cua_errors/ter_seq_err.py
CodonU/cua_warnings/__init__.py
CodonU/cua_warnings/api_warn.py
CodonU/cua_warnings/codon_usage_warns.py
CodonU/cua_warnings/email_warn.py
CodonU/cua_warnings/missing_codon_warn.py
CodonU/cua_warnings/no_codon_warn.py
CodonU/cua_warnings/no_syn_codon_warn.py
CodonU/extractor/__init__.py
CodonU/extractor/extract_cds.py
CodonU/extractor/extract_cds_lst.py
CodonU/extractor/extract_exome.py
CodonU/extractor/extract_prot.py
CodonU/extractor/internal_comp.py
CodonU/file_handler/__init__.py
CodonU/file_handler/get_gb.py
CodonU/file_handler/internal_comp.py
CodonU/file_handler/make_dir.py
CodonU/file_handler/read_file.py
CodonU/file_handler/set_entrez_param.py
CodonU/file_handler/write_exome_fasta.py
CodonU/file_handler/write_nucleotide_fasta.py
CodonU/file_handler/write_protein_fasta.py
CodonU/vizualizer/__init__.py
CodonU/vizualizer/plot_enc.py
CodonU/vizualizer/plot_funcs.py
CodonU/vizualizer/plot_neutrality.py
CodonU/vizualizer/plot_pr2.py