Metadata-Version: 2.1
Name: spectrum_utils
Version: 0.3.5
Summary: Mass spectrometry utility functions
Home-page: https://github.com/bittremieux/spectrum_utils
Author: Wout Bittremieux
Author-email: wbittremieux@health.ucsd.edu
License: Apache 2.0
Project-URL: Documentation, https://spectrum-utils.readthedocs.io/
Project-URL: Bug Tracker, https://github.com/bittremieux/spectrum_utils/issues
Description: # spectrum_utils
        
        [![conda](https://img.shields.io/conda/vn/bioconda/spectrum_utils?color=green)](http://bioconda.github.io/recipes/spectrum_utils/README.html)
        [![PyPI](https://img.shields.io/pypi/v/spectrum_utils?color=green)](https://pypi.org/project/spectrum_utils/)
        [![Build status](https://github.com/bittremieux/spectrum_utils/workflows/tests/badge.svg)](https://github.com/bittremieux/spectrum_utils/actions?query=workflow:tests)
        [![docs](https://readthedocs.org/projects/spectrum_utils/badge/?version=latest)](https://spectrum_utils.readthedocs.io/en/latest/?badge=latest)
        
        spectrum_utils is a Python package for efficient MS/MS spectrum processing and
        visualization.
        
        spectrum_utils contains the following features:
        
        - Spectrum processing
            - Precursor & noise peak removal
            - Intensity filtering
            - Intensity scaling
            - Peak annotations
                - Modification-aware (static & variable) peptide fragments
                - SMILES-based molecules
                - Custom strings
        - Spectrum plotting
            - Fully customizable individual spectrum plots
            - Mirror plot of matching spectra
            - Interactive spectrum plots
        
        ![spectrum_utils](spectrum_utils.png)
        
        ## Installation
        
        spectrum_utils requires Python version 3.6+ and can be installed with pip or
        conda.
        
        Using conda:
        
            conda install -c bioconda spectrum_utils
        
        Using pip:
        
            pip install spectrum_utils
        
        ## Documentation
        
        Please see the [documentation](https://spectrum-utils.readthedocs.io/) for
        detailed installation instructions, usage examples, the API reference, and more
        information.
        
        ## Citation
         
        spectrum_utils is freely available as open source under the
        [Apache 2.0 license](http://opensource.org/licenses/Apache-2.0).
        
        When using spectrum_utils please cite the following manuscript:
         
        Wout Bittremieux. "spectrum_utils: A Python package for mass spectrometry data
        processing and visualization." _Analytical Chemistry_ 92 (1) 659-661 (2020)
        doi:[10.1021/acs.analchem.9b04884](https://doi.org/10.1021/acs.analchem.9b04884).
        
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: iplot
