LICENCE
MANIFEST.in
README.md
setup.py
pandem_source.egg-info/PKG-INFO
pandem_source.egg-info/SOURCES.txt
pandem_source.egg-info/dependency_links.txt
pandem_source.egg-info/requires.txt
pandem_source.egg-info/top_level.txt
pandemsource/__init__.py
pandemsource/__main__.py
pandemsource/acquisition.py
pandemsource/acquisition_git.py
pandemsource/acquisition_git_local.py
pandemsource/acquisition_localFS.py
pandemsource/acquisition_medisys.py
pandemsource/acquisition_twitter.py
pandemsource/acquisition_url.py
pandemsource/acquisition_zenodo.py
pandemsource/admin.py
pandemsource/aggregator.py
pandemsource/api.py
pandemsource/config.py
pandemsource/dfreader.py
pandemsource/evaluator.py
pandemsource/formatreader.py
pandemsource/formatreader_csv.py
pandemsource/formatreader_json.py
pandemsource/formatreader_xls.py
pandemsource/formatreader_xml.py
pandemsource/nlp_annotator.py
pandemsource/orchestrator.py
pandemsource/pipeline.py
pandemsource/script_executor.py
pandemsource/standardizer.py
pandemsource/storage.py
pandemsource/unarchive.py
pandemsource/util.py
pandemsource/variables.py
pandemsource/worker.py
pandemsource/data/defaults.yml
pandemsource/data/list-of-variables.csv
pandemsource/data/variables-summary.csv
pandemsource/data/DLS/ICD-10-diseases.json
pandemsource/data/DLS/covid19-datahub-AUT.json
pandemsource/data/DLS/covid19-datahub-BEL.json
pandemsource/data/DLS/covid19-datahub-BGR.json
pandemsource/data/DLS/covid19-datahub-CYP.json
pandemsource/data/DLS/covid19-datahub-CZE.json
pandemsource/data/DLS/covid19-datahub-DEU.json
pandemsource/data/DLS/covid19-datahub-DNK.json
pandemsource/data/DLS/covid19-datahub-ESP.json
pandemsource/data/DLS/covid19-datahub-EST.json
pandemsource/data/DLS/covid19-datahub-FIN.json
pandemsource/data/DLS/covid19-datahub-FRA.json
pandemsource/data/DLS/covid19-datahub-GBR.json
pandemsource/data/DLS/covid19-datahub-GRC.json
pandemsource/data/DLS/covid19-datahub-HRV.json
pandemsource/data/DLS/covid19-datahub-HUN.json
pandemsource/data/DLS/covid19-datahub-IRL.json
pandemsource/data/DLS/covid19-datahub-ITA.json
pandemsource/data/DLS/covid19-datahub-LTU.json
pandemsource/data/DLS/covid19-datahub-LUX.json
pandemsource/data/DLS/covid19-datahub-LVA.json
pandemsource/data/DLS/covid19-datahub-MLT.json
pandemsource/data/DLS/covid19-datahub-NLD.json
pandemsource/data/DLS/covid19-datahub-POL.json
pandemsource/data/DLS/covid19-datahub-PRT.json
pandemsource/data/DLS/covid19-datahub-ROU.json
pandemsource/data/DLS/covid19-datahub-SVK.json
pandemsource/data/DLS/covid19-datahub-SVN.json
pandemsource/data/DLS/covid19-datahub-SWE.json
pandemsource/data/DLS/covid19-datahub.json
pandemsource/data/DLS/covid19-template-beds-staff.json
pandemsource/data/DLS/covid19-template-cases-RIVM.json
pandemsource/data/DLS/covid19-template-cases-RKI.json
pandemsource/data/DLS/covid19-template-cases-THL.json
pandemsource/data/DLS/covid19-template-cases.json
pandemsource/data/DLS/covid19-template-contact-tracing.json
pandemsource/data/DLS/covid19-template-daily-voc-voi-RIVM.json
pandemsource/data/DLS/covid19-template-daily-voc-voi-RKI.json
pandemsource/data/DLS/covid19-template-daily-voc-voi.json
pandemsource/data/DLS/covid19-template-hospitalised-deaths-RIVM.json
pandemsource/data/DLS/covid19-template-hospitalised-deaths-RKI.json
pandemsource/data/DLS/covid19-template-hospitalised-deaths-THL.json
pandemsource/data/DLS/covid19-template-hospitalised-deaths.json
pandemsource/data/DLS/covid19-template-local-regions-RIVM.json
pandemsource/data/DLS/covid19-template-local-regions-THL.json
pandemsource/data/DLS/covid19-template-local-regions.json
pandemsource/data/DLS/covid19-template-ltcf-RIVM.json
pandemsource/data/DLS/covid19-template-outbreaks-RKI.json
pandemsource/data/DLS/covid19-template-outbreaks.json
pandemsource/data/DLS/covid19-template-participatory-sentinel-surveilla.json
pandemsource/data/DLS/covid19-template-sex-age-comorbidity.json
pandemsource/data/DLS/covid19-template-testing-RIVM.json
pandemsource/data/DLS/covid19-template-testing-RKI.json
pandemsource/data/DLS/covid19-template-testing-THL.json
pandemsource/data/DLS/covid19-template-testing.json
pandemsource/data/DLS/covid19-template-vaccination-RKI.json
pandemsource/data/DLS/covid19-template-vaccination-THL.json
pandemsource/data/DLS/covid19-template-vaccination.json
pandemsource/data/DLS/covid19-template-voc-voi.json
pandemsource/data/DLS/ecdc-atlas-influenza.json
pandemsource/data/DLS/ecdc-covid19-age-group-variants.json
pandemsource/data/DLS/ecdc-covid19-age-group.json
pandemsource/data/DLS/ecdc-covid19-daily.json
pandemsource/data/DLS/ecdc-covid19-genomic-data.json
pandemsource/data/DLS/ecdc-covid19-measures.json
pandemsource/data/DLS/ecdc-covid19-vaccination.json
pandemsource/data/DLS/ecdc-covid19-variants.json
pandemsource/data/DLS/ecdc-covid19-weekly-hospital-occupancy-variants.json
pandemsource/data/DLS/ecdc-covid19-weekly-hospital-occupancy.json
pandemsource/data/DLS/ecdc-covid19-weekly.json
pandemsource/data/DLS/geonames-countries-of-origin.json
pandemsource/data/DLS/geonames-countries.json
pandemsource/data/DLS/health-resources-beds-eurostat.json
pandemsource/data/DLS/health-resources-national-eurostat.json
pandemsource/data/DLS/health-resources-nuts2-eurostat.json
pandemsource/data/DLS/influenza-net-visits.json
pandemsource/data/DLS/influenza-net.json
pandemsource/data/DLS/isco-08-ilo.json
pandemsource/data/DLS/medisys.json
pandemsource/data/DLS/nuts-eurostat.json
pandemsource/data/DLS/oecd-icu-beds.json
pandemsource/data/DLS/opensky-network-coviddataset.json
pandemsource/data/DLS/ourairports-of-origin.json
pandemsource/data/DLS/ourairports.json
pandemsource/data/DLS/owid-covid19-excess-mortality.json
pandemsource/data/DLS/pandem-2-2023-fx-DEU.json
pandemsource/data/DLS/pandem-2-2023-fx-NLD.json
pandemsource/data/DLS/serotracker.json
pandemsource/data/DLS/twitter-covid19.json
pandemsource/data/DLS/twitter.json
pandemsource/data/img/Partner-map_PANDEM-2.jpg
pandemsource/data/indicators/active_cases/function.R
pandemsource/data/indicators/active_cases_per_100k/function.R
pandemsource/data/indicators/article_count_alert/function.R
pandemsource/data/indicators/beds_occupancy_ratio/function.R
pandemsource/data/indicators/cases_for_female/function.R
pandemsource/data/indicators/cases_for_male/function.R
pandemsource/data/indicators/cases_with_diabetes/function.R
pandemsource/data/indicators/cases_with_kidney/function.R
pandemsource/data/indicators/cases_with_obesity/function.R
pandemsource/data/indicators/cases_with_respiratory_disease/function.R
pandemsource/data/indicators/confirmed_cases_alert/function.R
pandemsource/data/indicators/cum_active_to_daily/function.R
pandemsource/data/indicators/cum_articles/function.R
pandemsource/data/indicators/cum_deaths_to_daily/function.R
pandemsource/data/indicators/cum_doses_to_daily/function.R
pandemsource/data/indicators/cum_perf_tests_to_daily/function.R
pandemsource/data/indicators/cum_recovered_to_daily/function.R
pandemsource/data/indicators/cum_to_daily/function.R
pandemsource/data/indicators/daily_deaths_to_cum/function.R
pandemsource/data/indicators/daily_to_cum/function.R
pandemsource/data/indicators/deaths_by_age_group_0_14/function.R
pandemsource/data/indicators/deaths_by_age_group_15_24/function.R
pandemsource/data/indicators/deaths_by_age_group_25_49/function.R
pandemsource/data/indicators/deaths_by_age_group_50_64/function.R
pandemsource/data/indicators/deaths_by_age_group_65_79/function.R
pandemsource/data/indicators/deaths_by_age_group_80+/function.R
pandemsource/data/indicators/deaths_for_female/function.R
pandemsource/data/indicators/deaths_for_male/function.R
pandemsource/data/indicators/deaths_hospitalized_rate/function.R
pandemsource/data/indicators/deaths_icu_rate/function.R
pandemsource/data/indicators/deaths_infected_alert/function.R
pandemsource/data/indicators/excess_mortality_ltcf/function.R
pandemsource/data/indicators/hospital_admissions/function.R
pandemsource/data/indicators/hospital_admissions_comorbidities/function.R
pandemsource/data/indicators/hospital_admissions_comorbidities_per_100k/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_0_14/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_15_24/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_25_49/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_50_64/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_65_79/function.R
pandemsource/data/indicators/hospitalised_patients_by_age_group_80+/function.R
pandemsource/data/indicators/hospitalised_patients_per_100k/function.R
pandemsource/data/indicators/hospitalized_icu_with_comorbidities/function.R
pandemsource/data/indicators/hospitalized_with_comorbidities/function.R
pandemsource/data/indicators/icu_admissions/function.R
pandemsource/data/indicators/icu_occupancy_ratio/function.R
pandemsource/data/indicators/icu_patients_alert/function.R
pandemsource/data/indicators/icu_patients_by_age_group_0_14/function.R
pandemsource/data/indicators/icu_patients_by_age_group_15_24/function.R
pandemsource/data/indicators/icu_patients_by_age_group_25_49/function.R
pandemsource/data/indicators/icu_patients_by_age_group_50_64/function.R
pandemsource/data/indicators/icu_patients_by_age_group_65_79/function.R
pandemsource/data/indicators/icu_patients_by_age_group_80+/function.R
pandemsource/data/indicators/incidence/function.R
pandemsource/data/indicators/incidence_1000/function.R
pandemsource/data/indicators/length_of_stay/function.R
pandemsource/data/indicators/mortality_rate/function.R
pandemsource/data/indicators/new_performed_tests_antigen/function.R
pandemsource/data/indicators/new_performed_tests_naats/function.R
pandemsource/data/indicators/new_performed_tests_per_100k/function.R
pandemsource/data/indicators/new_performed_tests_unknown/function.R
pandemsource/data/indicators/new_to_dosed_injected/function.R
pandemsource/data/indicators/new_to_people_vaccinated/function.R
pandemsource/data/indicators/number_of_emergency_beds/function.R
pandemsource/data/indicators/number_of_notifications/function.R
pandemsource/data/indicators/number_of_notifications_per_100k/function.R
pandemsource/data/indicators/number_of_patients_alert/function.R
pandemsource/data/indicators/participants_declaring_symptoms_alert/function.R
pandemsource/data/indicators/people_vaccinated/function.R
pandemsource/data/indicators/people_vaccinated_for_female/function.R
pandemsource/data/indicators/people_vaccinated_for_male/function.R
pandemsource/data/indicators/people_vaccinated_hcw_admin_staff/function.R
pandemsource/data/indicators/people_vaccinated_hcw_doctors/function.R
pandemsource/data/indicators/people_vaccinated_hcw_emergency_responders/function.R
pandemsource/data/indicators/people_vaccinated_hcw_nurses/function.R
pandemsource/data/indicators/people_vaccinated_to_daily/function.R
pandemsource/data/indicators/population_for_female/function.R
pandemsource/data/indicators/population_for_male/function.R
pandemsource/data/indicators/population_hcw_admin_staff/function.R
pandemsource/data/indicators/population_hcw_doctors/function.R
pandemsource/data/indicators/population_hcw_emergency_responders/function.R
pandemsource/data/indicators/population_hcw_nurses/function.R
pandemsource/data/indicators/population_with_comorbidity/function.R
pandemsource/data/indicators/population_with_diabetes/function.R
pandemsource/data/indicators/population_with_kidney/function.R
pandemsource/data/indicators/population_with_obesity/function.R
pandemsource/data/indicators/population_with_respiratory_disease/function.R
pandemsource/data/indicators/positivity_rate/function.R
pandemsource/data/indicators/recovered_cases/function.R
pandemsource/data/indicators/recovered_cases_per_100k/function.R
pandemsource/data/indicators/rt_number/function.R
pandemsource/data/indicators/vaccination_coverage/function.R
pandemsource/data/input-local/Germany.csv
pandemsource/data/input-local/Netherlands.csv
pandemsource/data/input-local/oecd-icu-beds-capacity.csv
pandemsource/data/input-local-defaults/M.12 Upload templates_end_users.xlsx
pandemsource/data/scripts/R/download-covid19-datahub-AUT.R
pandemsource/data/scripts/R/download-covid19-datahub-BEL.R
pandemsource/data/scripts/R/download-covid19-datahub-BGR.R
pandemsource/data/scripts/R/download-covid19-datahub-CYP.R
pandemsource/data/scripts/R/download-covid19-datahub-CZE.R
pandemsource/data/scripts/R/download-covid19-datahub-DEU.R
pandemsource/data/scripts/R/download-covid19-datahub-DNK.R
pandemsource/data/scripts/R/download-covid19-datahub-ESP.R
pandemsource/data/scripts/R/download-covid19-datahub-EST.R
pandemsource/data/scripts/R/download-covid19-datahub-FIN.R
pandemsource/data/scripts/R/download-covid19-datahub-FRA.R
pandemsource/data/scripts/R/download-covid19-datahub-GBR.R
pandemsource/data/scripts/R/download-covid19-datahub-GRC.R
pandemsource/data/scripts/R/download-covid19-datahub-HRV.R
pandemsource/data/scripts/R/download-covid19-datahub-HUN.R
pandemsource/data/scripts/R/download-covid19-datahub-IRL.R
pandemsource/data/scripts/R/download-covid19-datahub-ITA.R
pandemsource/data/scripts/R/download-covid19-datahub-LTU.R
pandemsource/data/scripts/R/download-covid19-datahub-LUX.R
pandemsource/data/scripts/R/download-covid19-datahub-LVA.R
pandemsource/data/scripts/R/download-covid19-datahub-MLT.R
pandemsource/data/scripts/R/download-covid19-datahub-NLD.R
pandemsource/data/scripts/R/download-covid19-datahub-POL.R
pandemsource/data/scripts/R/download-covid19-datahub-PRT.R
pandemsource/data/scripts/R/download-covid19-datahub-ROU.R
pandemsource/data/scripts/R/download-covid19-datahub-SVK.R
pandemsource/data/scripts/R/download-covid19-datahub-SVN.R
pandemsource/data/scripts/R/download-covid19-datahub-SWE.R
pandemsource/data/scripts/R/download-covid19-datahub.R
pandemsource/data/scripts/R/pandem-source-app.R
pandemsource/data/scripts/R/ucl-simulator-ecdc-covid19-age-group-variant.R
pandemsource/data/scripts/R/ucl-simulator-ecdc-covid19-genomic-data.R
pandemsource/data/scripts/R/ucl-simulator-ecdc-covid19-hospital-occupancy-variant.R
pandemsource/data/scripts/py/rule_based_suggestion_extraction.py
pandemsource/data/scripts/py/sources/__init__.py
pandemsource/data/scripts/py/sources/covid19_datahub.py
pandemsource/data/scripts/py/sources/covid19_datahub_AUT.py
pandemsource/data/scripts/py/sources/covid19_datahub_BEL.py
pandemsource/data/scripts/py/sources/covid19_datahub_BGR.py
pandemsource/data/scripts/py/sources/covid19_datahub_CYP.py
pandemsource/data/scripts/py/sources/covid19_datahub_CZE.py
pandemsource/data/scripts/py/sources/covid19_datahub_DEU.py
pandemsource/data/scripts/py/sources/covid19_datahub_DNK.py
pandemsource/data/scripts/py/sources/covid19_datahub_ESP.py
pandemsource/data/scripts/py/sources/covid19_datahub_EST.py
pandemsource/data/scripts/py/sources/covid19_datahub_FIN.py
pandemsource/data/scripts/py/sources/covid19_datahub_FRA.py
pandemsource/data/scripts/py/sources/covid19_datahub_GBR.py
pandemsource/data/scripts/py/sources/covid19_datahub_GRC.py
pandemsource/data/scripts/py/sources/covid19_datahub_HRV.py
pandemsource/data/scripts/py/sources/covid19_datahub_HUN.py
pandemsource/data/scripts/py/sources/covid19_datahub_IRL.py
pandemsource/data/scripts/py/sources/covid19_datahub_ITA.py
pandemsource/data/scripts/py/sources/covid19_datahub_LTU.py
pandemsource/data/scripts/py/sources/covid19_datahub_LUX.py
pandemsource/data/scripts/py/sources/covid19_datahub_LVA.py
pandemsource/data/scripts/py/sources/covid19_datahub_MLT.py
pandemsource/data/scripts/py/sources/covid19_datahub_NLD.py
pandemsource/data/scripts/py/sources/covid19_datahub_POL.py
pandemsource/data/scripts/py/sources/covid19_datahub_PRT.py
pandemsource/data/scripts/py/sources/covid19_datahub_ROU.py
pandemsource/data/scripts/py/sources/covid19_datahub_SVK.py
pandemsource/data/scripts/py/sources/covid19_datahub_SVN.py
pandemsource/data/scripts/py/sources/covid19_datahub_SWE.py
pandemsource/data/scripts/py/sources/ecdc_covid19_measures.py
pandemsource/data/scripts/py/sources/ecdc_covid19_vaccination.py
pandemsource/data/scripts/py/sources/ecdc_covid19_weekly.py
pandemsource/data/scripts/py/sources/ecdc_covid19_weekly_hospital_occupancy.py
pandemsource/data/scripts/py/sources/health_resources_beds_eurostat.py
pandemsource/data/scripts/py/sources/health_resources_national_eurostat.py
pandemsource/data/scripts/py/sources/health_resources_nuts2_eurostat.py
pandemsource/data/scripts/py/sources/influenza_net.py
pandemsource/data/scripts/py/sources/influenza_net_visits.py
pandemsource/data/scripts/py/sources/nuts_eurostat.py
pandemsource/data/scripts/py/sources/opensky_network_coviddataset.py
pandemsource/data/scripts/py/sources/owid_covid19_excess_mortality.py
pandemsource/data/scripts/py/sources/pandem_2_2023_fx_DEU.py
pandemsource/data/scripts/py/sources/pandem_2_2023_fx_NLD.py
pandemsource/data/scripts/py/sources/serotracker.py
pandemsource/data/scripts/py/sources/twitter_covid19.py
pandemsource/data/suggestion/topic_clusters.csv
pandemsource/data/variables/comorbidity_code/default.json
pandemsource/data/variables/comorbidity_name/default.json
pandemsource/data/variables/detection_mode/default.json
pandemsource/data/variables/gender_alias/default.json
pandemsource/data/variables/gender_code/default.json
pandemsource/data/variables/gender_name/default.json
pandemsource/data/variables/geo_name/default.json
pandemsource/data/variables/government_measure/default.json
pandemsource/data/variables/government_policy/default.json
pandemsource/data/variables/measure_code/default.json
pandemsource/data/variables/pathogen_alias/default.json
pandemsource/data/variables/policy_code/default.json
pandemsource/data/variables/policy_type/default.json
pandemsource/data/variables/population_group/default.json
pandemsource/data/variables/population_type/default.json
pandemsource/data/variables/test_type/default.json
pandemsource/data/variables/vaccin/default.json
pandemsource/data/variables/vaccin_code/default.json
pandemsource/data/variables/visit_type_code/default.json
pandemsource/data/variables/visit_type_name/default.json
pandemsource/suggestion/__init__.py
pandemsource/suggestion/config.py
pandemsource/suggestion/data_preprocessing.py
pandemsource/suggestion/extract_span.py