.gitattributes
CHANGES.txt
Dockerfile
LICENSE
MANIFEST.in
README.md
pyproject.toml
renovate.json
requirements.ci.txt
requirements.txt
setup.cfg
setup.py
benchmark/.gitignore
benchmark/README.md
benchmark/benchmark.sh
benchmark/build_image.sh
benchmark/compare_cell_cell_interaction.png
benchmark/compare_neighbor_search.png
benchmark/fake_data.py
benchmark/plot.py
benchmark/spatialtis_full_analysis.py
benchmark/spatialtis_run.sh
benchmark/time-giotto.Dockerfile
benchmark/time-spatialtis.Dockerfile
benchmark/time-squidpy.Dockerfile
benchmark/time_giotto.r
benchmark/time_spatialtis.py
benchmark/time_squidpy.py
benchmark/result/giotto_cci_time_1core.csv
benchmark/result/giotto_cci_time_4core.csv
benchmark/result/giotto_nns_time_1core.csv
benchmark/result/giotto_nns_time_4core.csv
benchmark/result/spatialtis_cci_time_1core.csv
benchmark/result/spatialtis_cci_time_4core.csv
benchmark/result/spatialtis_embryo_cci_12core.csv
benchmark/result/spatialtis_embryo_nns_12core.csv
benchmark/result/spatialtis_multi_all_12cores.csv
benchmark/result/spatialtis_nns_time_1core.csv
benchmark/result/spatialtis_nns_time_4core.csv
benchmark/result/squidpy_embryo_cci_12core.csv
benchmark/result/squidpy_embryo_nns_12core.csv
benchmark/result/squidpy_multi_all_12cores.csv
examples/CODEX-Spleen-60K-1ROI.ipynb
examples/IMC-Diabetes-1Million.ipynb
examples/MERFISH.ipynb
examples/MIBI-TNBC-17K.ipynb
examples/ST-Mouse.ipynb
examples/Slide-Seq.ipynb
examples/seqFISH.ipynb
img/Logo-text.png
img/Logo-text.svg
img/Logo.svg
img/README.md
img/logo.ai
img/showcase.png
img/view_on_nbviewer.svg
img/view_on_rtd.svg
spatialtis/__init__.py
spatialtis/_version.py
spatialtis/abc.py
spatialtis/config.py
spatialtis/data_info.py
spatialtis/ext.py
spatialtis.egg-info/PKG-INFO
spatialtis.egg-info/SOURCES.txt
spatialtis.egg-info/dependency_links.txt
spatialtis.egg-info/requires.txt
spatialtis.egg-info/top_level.txt
spatialtis/basic/__init__.py
spatialtis/basic/basic.py
spatialtis/plotting/__init__.py
spatialtis/plotting/basic.py
spatialtis/plotting/interaction.py
spatialtis/plotting/map.py
spatialtis/plotting/marker_interaction.py
spatialtis/plotting/regular_spatial.py
spatialtis/plotting/utils.py
spatialtis/preprocessing/__init__.py
spatialtis/preprocessing/io.py
spatialtis/preprocessing/read_10x.py
spatialtis/preprocessing/read_images.py
spatialtis/spatial/__init__.py
spatialtis/spatial/autocorr.py
spatialtis/spatial/co_expression.py
spatialtis/spatial/distribution.py
spatialtis/spatial/enrichment.py
spatialtis/spatial/heterogeneity.py
spatialtis/spatial/hotspot.py
spatialtis/spatial/interaction.py
spatialtis/spatial/ncd_markers.py
spatialtis/spatial/neighbors.py
spatialtis/spatial/network.py
spatialtis/spatial/nmd_markers.py
spatialtis/spatial/sv_gene.py
spatialtis/spatial/utils.py
spatialtis/spatial/gcng/__init__.py
spatialtis/spatial/gcng/preprocess.py
spatialtis/spatial/gcng/trainer.py
spatialtis/utils/__init__.py
spatialtis/utils/docs.py
spatialtis/utils/guard.py
spatialtis/utils/io.py
spatialtis/utils/iters.py
spatialtis/utils/log.py
spatialtis/utils/parallel.py