AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
versioneer.py
hlso/__init__.py
hlso/__main__.py
hlso/_version.py
hlso/blast.py
hlso/cli.py
hlso/common.py
hlso/conversion.py
hlso/convert.py
hlso/export.py
hlso/haplotyping.py
hlso/paste.py
hlso/phylo.py
hlso/ref_blast.py
hlso/ref_consensus.py
hlso/ref_download.py
hlso/workflow.py
hlso.egg-info/PKG-INFO
hlso.egg-info/SOURCES.txt
hlso.egg-info/dependency_links.txt
hlso.egg-info/entry_points.txt
hlso.egg-info/not-zip-safe
hlso.egg-info/requires.txt
hlso.egg-info/top_level.txt
hlso/data/haplotype_table.auto.txt
hlso/data/haplotype_table.txt
hlso/data/haplotype_table.txt.bak
hlso/data/ref_seqs.fasta
hlso/data/ref_seqs.fasta.fai
hlso/data/ref_seqs.fasta.nhr
hlso/data/ref_seqs.fasta.nin
hlso/data/ref_seqs.fasta.nsq
hlso/web/__init__.py
hlso/web/app.py
hlso/web/callbacks.py
hlso/web/settings.py
hlso/web/ui.py
hlso/web/assets/bootstrap.min.css
hlso/web/assets/clsify.css
hlso/web/assets/hlso_example.zip
hlso/web/assets/fontawesome/css/all.min.css
hlso/web/assets/fontawesome/webfonts/fa-brands-400.eot
hlso/web/assets/fontawesome/webfonts/fa-brands-400.svg
hlso/web/assets/fontawesome/webfonts/fa-brands-400.ttf
hlso/web/assets/fontawesome/webfonts/fa-brands-400.woff
hlso/web/assets/fontawesome/webfonts/fa-brands-400.woff2
hlso/web/assets/fontawesome/webfonts/fa-regular-400.eot
hlso/web/assets/fontawesome/webfonts/fa-regular-400.svg
hlso/web/assets/fontawesome/webfonts/fa-regular-400.ttf
hlso/web/assets/fontawesome/webfonts/fa-regular-400.woff
hlso/web/assets/fontawesome/webfonts/fa-regular-400.woff2
hlso/web/assets/fontawesome/webfonts/fa-solid-900.eot
hlso/web/assets/fontawesome/webfonts/fa-solid-900.svg
hlso/web/assets/fontawesome/webfonts/fa-solid-900.ttf
hlso/web/assets/fontawesome/webfonts/fa-solid-900.woff
hlso/web/assets/fontawesome/webfonts/fa-solid-900.woff2
hlso/web/static/index.md
requirements/base.txt
requirements/dev.txt
requirements/test.txt
requirements/test_black.txt
tests/__init__.py
tests/data/Grimm2018.tsv
tests/data/Grimm2018_16S.fasta
tests/data/Grimm2018_50S.fasta
tests/data/MLST
tests/data/Nelson2012.tsv
tests/data/README.md
tests/data/fetch-grimm-2018.sh
tests/data/Grimm2018/16S/EU921623.fasta
tests/data/Grimm2018/16S/FJ498802.fasta
tests/data/Grimm2018/16S/FJ939136.fasta
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