README.md
logo_V1.jpg
requirements.txt
setup.py
MANAclust.egg-info/PKG-INFO
MANAclust.egg-info/SOURCES.txt
MANAclust.egg-info/dependency_links.txt
MANAclust.egg-info/requires.txt
MANAclust.egg-info/top_level.txt
lib/HoldOutSig_comparison_with_diffInput/code/do_sig_comparison.py
lib/HoldOutSig_comparison_with_diffInput/input/max_neg_log_p.png
lib/HoldOutSig_comparison_with_diffInput/input/norm_max_neg_log_p.png
lib/HoldOutSig_comparison_with_diffInput/input/all_num/AllNum_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/all_num/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/clin/Clin_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/clin/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/clin/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/clin/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/full/FULL_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/SurveyDataClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/full/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/meth/Meth_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/meth/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/meth/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/meth/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MethylomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/micro/Micro_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/micro/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/micro/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/micro/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/MicrobiomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/HoldOutSig_comparison_with_diffInput/input/trans/Trans_SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/trans/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_all_significant_postHocs.tsv
lib/HoldOutSig_comparison_with_diffInput/input/trans/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_global_statistical_differences.tsv
lib/HoldOutSig_comparison_with_diffInput/input/trans/test_ome_differences_by_consensus_groups/SurveyDataNonClustering/TranscriptomeClustering_consensus_groups/SurveyDataNonClustering_number_different_across_groups.png
lib/synthetic_data/results/categorical_F1_lines.png
lib/synthetic_data/results/categorical_accuracy_lines.png
lib/synthetic_data/results/categorical_feature_selection_F1.png
lib/synthetic_data/results/categorical_feature_selection_accuracy.png
lib/synthetic_data/results/categorical_feature_selection_precision.png
lib/synthetic_data/results/categorical_feature_selection_recall.png
lib/synthetic_data/results/categorical_feature_selection_specificity.png
lib/synthetic_data/results/categorical_feature_selection_stats.tsv
lib/synthetic_data/results/categorical_precision_lines.png
lib/synthetic_data/results/categorical_recall_lines.png
lib/synthetic_data/results/categorical_specificity_lines.png
lib/synthetic_data/results/clustering_results_mutual_information.png
lib/synthetic_data/results/clustering_results_mutual_information_lines.png
lib/synthetic_data/results/clustering_results_purity.png
lib/synthetic_data/results/clustering_results_purity_lines.png
lib/synthetic_data/results/clustering_results_summary.tsv
lib/synthetic_data/results/numeric_F1_lines.png
lib/synthetic_data/results/numeric_accuracy_lines.png
lib/synthetic_data/results/numeric_feature_selection_F1.png
lib/synthetic_data/results/numeric_feature_selection_accuracy.png
lib/synthetic_data/results/numeric_feature_selection_precision.png
lib/synthetic_data/results/numeric_feature_selection_recall.png
lib/synthetic_data/results/numeric_feature_selection_specificity.png
lib/synthetic_data/results/numeric_feature_selection_stats.tsv
lib/synthetic_data/results/numeric_precision_lines.png
lib/synthetic_data/results/numeric_recall_lines.png
lib/synthetic_data/results/numeric_specificity_lines.png
lib/synthetic_data_categorical/categorical_clustering_bench.py
lib/synthetic_data_categorical/results/abs_dist_k_boxplot.png
lib/synthetic_data_categorical/results/abs_dist_k_line.png
lib/synthetic_data_categorical/results/categorical_clustering_results.tsv
lib/synthetic_data_categorical/results/guessed_k_boxplot.png
lib/synthetic_data_categorical/results/guessed_k_line.png
lib/synthetic_data_categorical/results/purity_boxplot.png
lib/synthetic_data_categorical/results/purity_line.png
lib/synthetic_data_categorical/results/relative_mi_boxplot.png
lib/synthetic_data_categorical/results/relative_mi_line.png
lib/tcga_benchmark/cancer_benchmark.R
lib/tcga_benchmark/plot_tcga_results.py
lib/tcga_benchmark/tcga_results_summary.tsv
lib/tcga_benchmark/tcga_stats.R
mana_clust/__init__.py
mana_clust/common_functions.py
mana_clust/mana_annotate_results.py
mana_clust/mana_cat.py
mana_clust/mana_clust.py
mana_clust/mana_continuous.py
mana_clust/mana_log_loss.py
mana_clust/mana_make_website.py
mana_clust/run_simulation_study.py
mana_clust/simulate_datasets.py
mana_clust/__pycache__/__init__.cpython-35.pyc
mana_clust/__pycache__/__init__.cpython-37.pyc
mana_clust/__pycache__/common_functions.cpython-35.pyc
mana_clust/__pycache__/mom_cat.cpython-35.pyc
mana_clust/__pycache__/mom_clust.cpython-35.pyc
mana_clust/__pycache__/mom_clust.cpython-37.pyc
mana_clust/__pycache__/mom_continuous.cpython-35.pyc
mana_clust/__pycache__/run_simulation_study.cpython-35.pyc
mana_clust/__pycache__/run_simulation_study.cpython-37.pyc
mana_clust/__pycache__/simulate_datasets.cpython-35.pyc
test/categorical_data_file_0.tsv
test/categorical_data_file_0_test.tsv
test/numeric_data_file_0.tsv
test/numeric_data_file_0_test.tsv
test/numeric_data_file_1.tsv
test/numeric_data_file_1_test.tsv